Variant report

Variant	rs17782153
Chromosome Location	chr14:67991028-67991029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:67980390..67986275-chr14:67988226..67995787,13	MCF-7	breast:
2	chr14:67980236..67983676-chr14:67990414..67993789,5	MCF-7	breast:
3	chr14:67984380..67986731-chr14:67988882..67991536,2	K562	blood:
4	chr14:67988568..67991154-chr14:67998353..68000955,2	MCF-7	breast:
5	chr14:67945813..67949224-chr14:67990739..67993658,4	MCF-7	breast:
6	chr14:67976992..67979200-chr14:67989506..67991130,2	MCF-7	breast:
7	chr14:67968272..67970276-chr14:67989655..67991450,2	MCF-7	breast:
8	chr14:67893018..67896627-chr14:67990879..67994840,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198133	Chromatin interaction
ENSG00000054690	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2273598	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67982600-67999000	Weak transcription	Right Atrium	heart
2	chr14:67988800-67991600	Enhancers	Brain Cingulate Gyrus	brain
3	chr14:67988800-67991600	Enhancers	Brain Hippocampus Middle	brain
4	chr14:67989000-67991200	Enhancers	Brain Anterior Caudate	brain
5	chr14:67989000-67991600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr14:67989400-67991200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:67989400-67991400	Enhancers	Brain Angular Gyrus	brain
8	chr14:67989400-67991800	Enhancers	Brain Substantia Nigra	brain
9	chr14:67989600-67991600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:67989800-67993000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:67990200-67991400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:67990200-67991400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:67990200-67991400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr14:67990600-67991800	Enhancers	Colonic Mucosa	Colon
15	chr14:67990800-67991400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:67990800-67991800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:67991000-67991200	Bivalent Enhancer	Esophagus	oesophagus
18	chr14:67991000-67991200	Enhancers	Fetal Intestine Small	intestine
19	chr14:67991000-67991200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr14:67991000-67991200	Bivalent Enhancer	Stomach Mucosa	stomach
21	chr14:67991000-67991200	Enhancers	HepG2	liver
22	chr14:67991000-67991200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
23	chr14:67991000-67991400	Enhancers	Adipose Nuclei	Adipose
24	chr14:67991000-67991400	Enhancers	Duodenum Mucosa	Duodenum
25	chr14:67991000-67991400	Bivalent Enhancer	Fetal Lung	lung
26	chr14:67991000-67991400	Enhancers	Left Ventricle	heart
27	chr14:67991000-67991400	Bivalent Enhancer	Small Intestine	intestine
28	chr14:67991000-67991600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:67991000-67991600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
30	chr14:67991000-67991600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
31	chr14:67991000-67991600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:67991000-67991600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:67991000-67991600	Bivalent Enhancer	HSMMtube	muscle
34	chr14:67991000-67991800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:67991000-67991800	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr14:67991000-67991800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon

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