Variant report

Variant	rs17783653
Chromosome Location	chr14:68631388-68631389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68630532..68635204-chr14:68697159..68701180,5	MCF-7	breast:
2	chr14:68631061..68632736-chr14:68646338..68648458,2	MCF-7	breast:
3	chr14:68631219..68633531-chr14:68676403..68678551,2	MCF-7	breast:
4	chr14:68630944..68632951-chr14:68635670..68637277,2	MCF-7	breast:
5	chr14:68630940..68633752-chr14:68640737..68642977,2	MCF-7	breast:
6	chr14:68631283..68635497-chr14:68656962..68661024,3	MCF-7	breast:
7	chr14:68629394..68631878-chr14:68649485..68651925,2	MCF-7	breast:
8	chr14:68629386..68636406-chr14:68656636..68661805,14	MCF-7	breast:
9	chr14:68606462..68608826-chr14:68629995..68632685,3	MCF-7	breast:
10	chr14:68630093..68632260-chr14:69253853..69256303,2	MCF-7	breast:
11	chr14:68630773..68635731-chr14:69256780..69262810,10	MCF-7	breast:
12	chr14:68603253..68606404-chr14:68630681..68636382,6	MCF-7	breast:
13	chr14:68630159..68635177-chr14:68676158..68679265,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs749350	1.00[CEU][hapmap]
rs749352	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68625000-68635600	Weak transcription	HSMM	muscle
2	chr14:68625200-68635000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:68625200-68636800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:68628400-68632000	Weak transcription	Aorta	Aorta
5	chr14:68629600-68632400	Enhancers	Fetal Kidney	kidney
6	chr14:68629600-68632800	Enhancers	Colon Smooth Muscle	Colon
7	chr14:68629600-68633400	Enhancers	Rectal Smooth Muscle	rectum
8	chr14:68629600-68642200	Enhancers	Fetal Intestine Large	intestine
9	chr14:68629600-68642400	Enhancers	Fetal Intestine Small	intestine
10	chr14:68629800-68632800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:68630000-68632600	Enhancers	Duodenum Mucosa	Duodenum
12	chr14:68630000-68632600	Enhancers	Fetal Lung	lung
13	chr14:68630400-68632800	Enhancers	Ovary	ovary
14	chr14:68630400-68636400	Weak transcription	Small Intestine	intestine
15	chr14:68630600-68632400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr14:68630600-68632400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:68630600-68642400	Enhancers	Stomach Mucosa	stomach
18	chr14:68630800-68631400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr14:68630800-68631400	Enhancers	HepG2	liver
20	chr14:68631000-68631400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr14:68631000-68631600	Enhancers	NHLF	lung
22	chr14:68631000-68631800	Enhancers	Fetal Stomach	stomach
23	chr14:68631000-68632400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr14:68631000-68632800	Flanking Active TSS	A549	lung
25	chr14:68631200-68631400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:68631200-68631400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:68631200-68631400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr14:68631200-68631400	Enhancers	Psoas Muscle	Psoas
29	chr14:68631200-68631600	Flanking Active TSS	Liver	Liver
30	chr14:68631200-68631600	Enhancers	Fetal Muscle Leg	muscle
31	chr14:68631200-68631600	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr14:68631200-68631800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:68631200-68632200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr14:68631200-68632400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:68631200-68632400	Enhancers	Stomach Smooth Muscle	stomach
36	chr14:68631200-68633000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr14:68631200-68633400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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