Variant report

Variant rs1778598
Chromosome Location chr1:144991959-144991960
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144983000-144997600 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:144983200-144992000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr1:144983400-144994000 Weak transcription H1 Cell Line embryonic stem cell
4 chr1:144983400-144994200 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr1:144983400-144994200 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr1:144985800-144993400 Enhancers Pancreatic Islets Pancreatic Islet
7 chr1:144987000-144993000 Weak transcription Lung lung
8 chr1:144987000-144994400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:144988000-144996400 Genic enhancers Brain Germinal Matrix brain
10 chr1:144989000-144992200 Enhancers Fetal Brain Female brain
11 chr1:144989000-144993000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:144989000-144993800 Transcr. at gene 5' and 3' K562 blood
13 chr1:144989600-144992400 Enhancers Fetal Intestine Large intestine
14 chr1:144989800-144992800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:144989800-144994200 Weak transcription Fetal Kidney kidney
16 chr1:144989800-144995400 Active TSS Left Ventricle heart
17 chr1:144990000-144992000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:144990000-144992200 Enhancers Colon Smooth Muscle Colon
19 chr1:144990000-144992600 Weak transcription Fetal Stomach stomach
20 chr1:144990000-144993000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr1:144990000-144993000 Weak transcription Gastric stomach
22 chr1:144990000-144993000 Genic enhancers HSMM muscle
23 chr1:144990000-144994600 Weak transcription NH-A brain
24 chr1:144990000-144998800 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr1:144990200-144992200 Enhancers Fetal Brain Male brain
26 chr1:144990400-144993000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr1:144990400-144993000 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr1:144990600-144993800 Transcr. at gene 5' and 3' HSMMtube muscle
29 chr1:144990600-144996200 Genic enhancers Muscle Satellite Cultured Cells --
30 chr1:144990600-144996400 Weak transcription Primary B cells from cord blood blood
31 chr1:144990600-144998600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr1:144990800-144992000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:144990800-144992800 Weak transcription Liver Liver
34 chr1:144990800-144994600 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr1:144991000-144993000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:144991000-144994800 Transcr. at gene 5' and 3' Skeletal Muscle Female skeletal muscle
37 chr1:144991200-144992000 Genic enhancers Placenta Placenta
38 chr1:144991200-144992400 Weak transcription Brain Angular Gyrus brain
39 chr1:144991200-144992400 Enhancers Esophagus oesophagus
40 chr1:144991200-144995200 Enhancers Pancreas Pancrea
41 chr1:144991400-144993000 Active TSS Right Atrium heart
42 chr1:144991400-144994000 Weak transcription Adipose Nuclei Adipose
43 chr1:144991400-144994600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:144991400-145004200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:144991600-144992000 Transcr. at gene 5' and 3' Fetal Heart heart
46 chr1:144991600-144992200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr1:144991600-144992400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr1:144991600-144992800 Active TSS Fetal Muscle Trunk muscle
49 chr1:144991600-144993400 Genic enhancers Aorta Aorta
50 chr1:144991600-144993800 Genic enhancers Osteobl bone

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