Variant report

Variant rs1778725
Chromosome Location chr1:145005985-145005986
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144992600-145007800 Weak transcription HMEC breast
2 chr1:144995800-145008600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:144996600-145008600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:144997400-145007800 Weak transcription NHEK skin
5 chr1:144998000-145009000 Weak transcription Stomach Mucosa stomach
6 chr1:144999200-145008600 Weak transcription Rectal Smooth Muscle rectum
7 chr1:145000400-145008400 Genic enhancers Muscle Satellite Cultured Cells --
8 chr1:145000400-145010200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:145000600-145008000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:145000800-145006000 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:145000800-145009000 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr1:145000800-145009000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr1:145000800-145021600 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:145001000-145006000 Weak transcription ES-WA7 Cell Line embryonic stem cell
15 chr1:145001000-145006000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:145001000-145006000 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr1:145001000-145006000 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr1:145001000-145006000 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr1:145001000-145008000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:145001000-145009000 Weak transcription Primary hematopoietic stem cells blood
21 chr1:145001200-145006200 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr1:145001400-145008400 Weak transcription Monocytes-CD14+_RO01746 blood
23 chr1:145001600-145008400 Weak transcription Primary B cells from cord blood blood
24 chr1:145002800-145006200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:145002800-145012000 Weak transcription Pancreas Pancrea
26 chr1:145002800-145024200 Weak transcription Gastric stomach
27 chr1:145003200-145006600 Genic enhancers Aorta Aorta
28 chr1:145003600-145006000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:145004000-145014800 Strong transcription Placenta Placenta
30 chr1:145004200-145006200 Strong transcription Liver Liver
31 chr1:145004200-145006800 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:145004200-145007000 Strong transcription Stomach Smooth Muscle stomach
33 chr1:145004400-145007600 Strong transcription Brain Germinal Matrix brain
34 chr1:145004600-145006000 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr1:145004600-145006000 Genic enhancers HSMMtube muscle
36 chr1:145004600-145006200 Strong transcription Fetal Brain Female brain
37 chr1:145004600-145006200 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr1:145004600-145006400 Strong transcription Fetal Muscle Trunk muscle
39 chr1:145004600-145006800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:145004600-145008000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:145004600-145009200 Weak transcription Colon Smooth Muscle Colon
42 chr1:145004600-145016200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr1:145004800-145006200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr1:145004800-145006200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr1:145004800-145006200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
46 chr1:145004800-145006200 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr1:145004800-145006200 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:145004800-145006200 Strong transcription Osteobl bone
49 chr1:145004800-145006400 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr1:145004800-145006400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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