Variant report

Variant	rs17790915
Chromosome Location	chr5:128118887-128118888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17678166	0.83[AFR][1000 genomes]
rs72787271	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128117000-128119400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:128117200-128119000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:128117400-128119000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:128117600-128119000	Enhancers	Brain Anterior Caudate	brain
5	chr5:128117600-128119000	Enhancers	Brain Hippocampus Middle	brain
6	chr5:128117600-128119000	Enhancers	HUVEC	blood vessel
7	chr5:128117600-128119000	Enhancers	NH-A	brain
8	chr5:128117800-128119000	Enhancers	Fetal Muscle Leg	muscle
9	chr5:128118000-128119000	Enhancers	Brain Substantia Nigra	brain
10	chr5:128118000-128119400	Enhancers	Hela-S3	cervix
11	chr5:128118400-128120200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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