Variant report

Variant	rs17793361
Chromosome Location	chr6:132712925-132712926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62424861	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9402413	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv5480	chr6:132705614-132714040	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3486501	chr6:132706459-132713557	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3486500	chr6:132706884-132713457	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3486503	chr6:132706884-132713457	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv604677	chr6:132708163-132718231	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604690	chr6:132709300-132718231	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2422115	chr6:132709357-132713043	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv442008	chr6:132709357-132713043	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132701600-132713200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132709800-132713000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:132709800-132713000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:132709800-132713000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:132709800-132713000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:132709800-132713200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:132711600-132713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:132711600-132713800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:132711800-132713000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:132712400-132713200	Weak transcription	Fetal Stomach	stomach
11	chr6:132712400-132713800	Enhancers	NHEK	skin
12	chr6:132712600-132713000	Enhancers	HSMM	muscle
13	chr6:132712600-132713000	Enhancers	NH-A	brain
14	chr6:132712800-132713000	Active TSS	Brain Germinal Matrix	brain
15	chr6:132712800-132713000	Enhancers	Brain Substantia Nigra	brain
16	chr6:132712800-132713000	Flanking Active TSS	NHLF	lung
17	chr6:132712800-132713200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:132712800-132713200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:132712800-132713200	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:132712800-132713200	Flanking Active TSS	HMEC	breast
21	chr6:132712800-132713200	Enhancers	Osteobl	bone
22	chr6:132712800-132713400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:132712800-132713400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:132712800-132713400	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr6:132712800-132713400	Flanking Active TSS	Fetal Brain Female	brain
26	chr6:132712800-132713600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:132712800-132713600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:132712800-132713600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:132712800-132713600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:132712800-132713600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:132712800-132713600	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr6:132712800-132713800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:132712800-132713800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:132712800-132713800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:132712800-132713800	Flanking Active TSS	Fetal Brain Male	brain
36	chr6:132712800-132713800	Flanking Active TSS	HSMMtube	muscle
37	chr6:132712800-132714000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:132712800-132714000	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr6:132712800-132714000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr6:132712800-132714000	Flanking Active TSS	Fetal Lung	lung
41	chr6:132712800-132714000	Flanking Active TSS	NHDF-Ad	bronchial
42	chr6:132712800-132714400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr6:132712800-132714400	Enhancers	Fetal Kidney	kidney
44	chr6:132712800-132714600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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