Variant report

Variant	rs1779547
Chromosome Location	chr5:165040685-165040686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1549815	0.85[AMR][1000 genomes]
rs1612577	0.82[AMR][1000 genomes]
rs1618852	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1652916	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1778372	0.86[AMR][1000 genomes]
rs1778378	0.87[AMR][1000 genomes]
rs1778381	0.87[AMR][1000 genomes]
rs1778402	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1779518	0.82[EUR][1000 genomes]
rs1779542	0.86[AMR][1000 genomes]
rs1779543	0.86[AMR][1000 genomes]
rs1782140	0.80[EUR][1000 genomes]
rs1782142	0.80[EUR][1000 genomes]
rs1782143	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1782146	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1782147	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1782164	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1782185	0.87[AMR][1000 genomes]
rs2567023	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018838	chr5:164942118-165164396	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:165039000-165043800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:165039600-165041000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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