Variant report
| Variant | rs17799408 |
|---|---|
| Chromosome Location | chr6:80107017-80107018 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10484943 | 0.94[ASN][1000 genomes] |
| rs1385530 | 0.96[ASN][1000 genomes] |
| rs16890623 | 0.87[ASN][1000 genomes] |
| rs16890720 | 0.92[ASN][1000 genomes] |
| rs174525 | 0.94[ASN][1000 genomes] |
| rs17726405 | 0.94[ASN][1000 genomes] |
| rs17743065 | 0.96[ASN][1000 genomes] |
| rs17743190 | 0.96[ASN][1000 genomes] |
| rs17799462 | 0.96[ASN][1000 genomes] |
| rs17799708 | 0.96[ASN][1000 genomes] |
| rs17799762 | 0.96[ASN][1000 genomes] |
| rs17799805 | 0.96[ASN][1000 genomes] |
| rs17800074 | 0.94[ASN][1000 genomes] |
| rs196667 | 0.94[ASN][1000 genomes] |
| rs196670 | 0.94[ASN][1000 genomes] |
| rs3846735 | 0.96[ASN][1000 genomes] |
| rs3857449 | 0.96[ASN][1000 genomes] |
| rs3857450 | 0.96[ASN][1000 genomes] |
| rs3857451 | 0.96[ASN][1000 genomes] |
| rs3857453 | 0.96[ASN][1000 genomes] |
| rs3857454 | 0.96[ASN][1000 genomes] |
| rs3907327 | 0.96[ASN][1000 genomes] |
| rs3907328 | 0.96[ASN][1000 genomes] |
| rs3907329 | 0.96[ASN][1000 genomes] |
| rs4092965 | 0.92[ASN][1000 genomes] |
| rs4364439 | 0.96[ASN][1000 genomes] |
| rs4580824 | 0.94[ASN][1000 genomes] |
| rs55715962 | 0.96[ASN][1000 genomes] |
| rs55805600 | 0.94[ASN][1000 genomes] |
| rs55989328 | 0.92[ASN][1000 genomes] |
| rs56226127 | 0.96[ASN][1000 genomes] |
| rs56277073 | 0.96[ASN][1000 genomes] |
| rs62411314 | 0.90[ASN][1000 genomes] |
| rs6925847 | 0.94[ASN][1000 genomes] |
| rs6939506 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:80102800-80109000 | Weak transcription | Brain Germinal Matrix | brain |
