Variant report

Variant	rs17803470
Chromosome Location	chr2:95874133-95874134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:95829966..95832262-chr2:95871285..95874374,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144026	Chromatin interaction
ENSG00000163067	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12471385	1.00[AFR][1000 genomes]
rs12998267	1.00[AFR][1000 genomes]
rs71427017	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005016	chr2:95327875-95914467	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv817258	chr2:95618109-96340788	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv482276	chr2:95711972-95888406	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1008945	chr2:95745367-96062107	Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv817299	chr2:95799814-96159275	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17803470	TACSTD2	trans	lymphoblastoid	seeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:95871800-95874400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:95872000-95874400	Active TSS	H1 Cell Line	embryonic stem cell
3	chr2:95872000-95874400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:95872000-95874600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr2:95872000-95874600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr2:95872000-95874600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:95872200-95874200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:95872200-95874200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr2:95872200-95874200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:95872200-95874400	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr2:95872200-95874400	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr2:95872200-95874600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr2:95872400-95874200	Active TSS	Brain Angular Gyrus	brain
14	chr2:95872400-95874200	Active TSS	Colon Smooth Muscle	Colon
15	chr2:95872400-95874600	Active TSS	Stomach Smooth Muscle	stomach
16	chr2:95872600-95874200	Active TSS	Muscle Satellite Cultured Cells	--
17	chr2:95872600-95874200	Active TSS	HSMMtube	muscle
18	chr2:95872600-95874200	Active TSS	NH-A	brain
19	chr2:95872600-95874200	Active TSS	NHDF-Ad	bronchial
20	chr2:95872600-95874600	Active TSS	H9 Cell Line	embryonic stem cell
21	chr2:95872800-95874400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:95873400-95874200	Flanking Active TSS	HMEC	breast
23	chr2:95873400-95875600	ZNF genes & repeats	HSMM	muscle
24	chr2:95873600-95874200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr2:95873600-95874200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:95873600-95874200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:95873600-95874200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:95873600-95874200	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr2:95873600-95874400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr2:95873600-95874400	Enhancers	Fetal Heart	heart
31	chr2:95873600-95875600	Transcr. at gene 5' and 3'	Dnd41	blood
32	chr2:95873600-95876400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr2:95873600-95876400	Weak transcription	Small Intestine	intestine
34	chr2:95873600-95886600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:95873800-95874200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr2:95873800-95874400	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr2:95873800-95874600	Weak transcription	Lung	lung
38	chr2:95873800-95875000	Weak transcription	Esophagus	oesophagus
39	chr2:95873800-95875400	ZNF genes & repeats	A549	lung
40	chr2:95873800-95876200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr2:95873800-95876400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:95873800-95876400	Weak transcription	Gastric	stomach
43	chr2:95873800-95877000	Weak transcription	Stomach Mucosa	stomach
44	chr2:95873800-95877200	Weak transcription	Placenta	Placenta
45	chr2:95873800-95877400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr2:95873800-95886200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:95874000-95874200	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr2:95874000-95874200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:95874000-95874200	Active TSS	Primary hematopoietic stem cells	blood
50	chr2:95874000-95874200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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