Variant report

Variant	rs17807102
Chromosome Location	chr10:118016372-118016373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:118016270-118016471	MCF-7	breast:	n/a	chr10:118016396-118016405
2	REST	chr10:118016296-118016515	H1-hESC	embryonic stem cell:	n/a	chr10:118016396-118016405
3	REST	chr10:118016221-118016479	H1-hESC	embryonic stem cell:	n/a	chr10:118016396-118016405
4	REST	chr10:118016188-118016561	PFSK-1	brain:	n/a	chr10:118016396-118016405
5	POLR2A	chr10:118015573-118017602	MCF-7	breast:	n/a	n/a
6	REST	chr10:118016146-118016557	PFSK-1	brain:	n/a	chr10:118016396-118016405

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118014146..118017027-chr10:118028962..118031890,3	MCF-7	breast:

Variant related genes	Relation type
GFRA1	TF binding region
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8192662	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1043339	chr10:118010822-118025492	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118012200-118016800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:118013000-118017200	Enhancers	Fetal Muscle Leg	muscle
3	chr10:118013200-118016400	Enhancers	Brain Germinal Matrix	brain
4	chr10:118013200-118017600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:118013400-118016400	Enhancers	Ovary	ovary
6	chr10:118014000-118016400	Enhancers	Fetal Stomach	stomach
7	chr10:118014200-118017000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:118014200-118017200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:118014600-118024000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:118014800-118022200	Weak transcription	Liver	Liver
11	chr10:118015000-118016600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:118015200-118017600	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:118015200-118019200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:118015600-118016400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr10:118015800-118017600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:118015800-118022400	Weak transcription	Fetal Kidney	kidney
17	chr10:118016000-118016600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:118016000-118016800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:118016000-118020600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:118016000-118023000	Weak transcription	HSMMtube	muscle
21	chr10:118016200-118016800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
22	chr10:118016200-118019800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:118016200-118024400	Weak transcription	HSMM	muscle

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