Variant report
Variant | rs17808261 |
---|---|
Chromosome Location | chr12:10418753-10418754 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10845084 | 0.82[AMR][1000 genomes] |
rs10845089 | 1.00[CEU][hapmap] |
rs10845090 | 1.00[CEU][hapmap] |
rs10845091 | 1.00[CEU][hapmap] |
rs10845103 | 1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs11053699 | 0.89[AMR][1000 genomes] |
rs11053704 | 0.89[AMR][1000 genomes] |
rs11053711 | 0.82[AMR][1000 genomes] |
rs11053712 | 1.00[CEU][hapmap] |
rs11613226 | 1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs12370398 | 1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rs12372618 | 1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs17808267 | 1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17808345 | 0.95[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs3898122 | 0.84[AMR][1000 genomes] |
rs4237965 | 1.00[CEU][hapmap] |
rs4329754 | 0.84[AMR][1000 genomes] |
rs56146423 | 0.89[AMR][1000 genomes] |
rs56374289 | 0.82[AMR][1000 genomes] |
rs61919792 | 0.89[AMR][1000 genomes] |
rs61919793 | 0.81[AMR][1000 genomes] |
rs7953558 | 1.00[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv898757 | chr12:10229281-10614641 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
2 | nsv1054811 | chr12:10350587-10440005 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
3 | nsv832328 | chr12:10398071-10620443 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
4 | nsv557454 | chr12:10417260-10440885 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:10398800-10436200 | Weak transcription | Placenta | Placenta |