Variant report

Variant	rs17810421
Chromosome Location	chr8:63111513-63111514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16928580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928599	1.00[ASN][1000 genomes]
rs17237587	1.00[ASN][1000 genomes]
rs59158455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60099345	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61214522	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007348	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72649343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666340	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016883	chr8:63110741-63171354	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63111400-63112200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:63111400-63112200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:63111400-63112600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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