Variant report

Variant	rs17810997
Chromosome Location	chr15:72045252-72045253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72040056..72042121-chr15:72044649..72046510,3	MCF-7	breast:
2	chr15:72040432..72042669-chr15:72043412..72046159,2	K562	blood:
3	chr15:72039979..72042756-chr15:72042762..72047195,4	MCF-7	breast:
4	chr15:72045078..72045591-chr15:72448055..72448912,2	MCF-7	breast:
5	chr15:72045149..72045729-chr15:72448063..72448589,2	K562	blood:
6	chr15:72044656..72045647-chr15:72072459..72073265,3	MCF-7	breast:
7	chr15:72045064..72045725-chr15:72093586..72094173,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2291278	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
2	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:72024600-72045600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
5	chr15:72031200-72048200	Weak transcription	Left Ventricle	heart
6	chr15:72036400-72071400	Weak transcription	Fetal Lung	lung
7	chr15:72039400-72050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:72040600-72054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr15:72041000-72045800	Weak transcription	Aorta	Aorta
10	chr15:72041000-72050200	Weak transcription	Lung	lung
11	chr15:72041400-72050200	Weak transcription	Colonic Mucosa	Colon
12	chr15:72041400-72054200	Weak transcription	Gastric	stomach
13	chr15:72042000-72056800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:72043200-72050200	Weak transcription	Esophagus	oesophagus
15	chr15:72043400-72049000	Weak transcription	Fetal Stomach	stomach
16	chr15:72043400-72049400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:72044000-72046400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:72044200-72046200	Enhancers	Osteobl	bone
19	chr15:72044200-72046400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:72044200-72046400	Enhancers	HUVEC	blood vessel
21	chr15:72044200-72049000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:72044400-72045600	Flanking Active TSS	A549	lung
23	chr15:72044400-72045800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:72044400-72046200	Enhancers	Fetal Muscle Leg	muscle
25	chr15:72044400-72046200	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr15:72044400-72046200	Enhancers	HSMMtube	muscle
27	chr15:72044400-72046200	Enhancers	NH-A	brain
28	chr15:72044400-72046400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:72044400-72046400	Enhancers	Fetal Intestine Large	intestine
30	chr15:72044400-72046400	Enhancers	HSMM	muscle
31	chr15:72044400-72046400	Enhancers	NHDF-Ad	bronchial
32	chr15:72044400-72048600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr15:72044600-72046200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:72044600-72046200	Enhancers	Fetal Intestine Small	intestine
35	chr15:72044600-72046400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:72044600-72046400	Enhancers	Hela-S3	cervix
37	chr15:72044600-72046600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:72044800-72045400	Enhancers	Duodenum Mucosa	Duodenum
39	chr15:72044800-72045600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:72044800-72045600	Weak transcription	NHLF	lung
41	chr15:72044800-72046000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:72044800-72046000	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr15:72044800-72046200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:72045000-72045400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:72045000-72045400	Enhancers	HepG2	liver
46	chr15:72045000-72045600	Enhancers	Fetal Kidney	kidney
47	chr15:72045000-72045800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:72045000-72046200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:72045000-72046400	Enhancers	HMEC	breast
50	chr15:72045000-72046400	Enhancers	NHEK	skin

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