Variant report

Variant	rs17811130
Chromosome Location	chr11:85391440-85391441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85385043..85387770-chr11:85389067..85391725,3	MCF-7	breast:
2	chr11:85389569..85392078-chr11:85394347..85396779,2	MCF-7	breast:
3	chr11:85376012..85378265-chr11:85390192..85392054,2	K562	blood:
4	chr11:85373910..85377412-chr11:85390875..85393447,4	MCF-7	breast:
5	chr11:85374551..85377717-chr11:85388541..85395552,6	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC89-1	chr11:85389665-85393535	NONHSAT023443

No data

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11820806	1.00[ASN][1000 genomes]
rs11822476	1.00[ASN][1000 genomes]
rs17148336	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17743922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17811094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35751209	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61740616	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7105905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105923	1.00[ASN][1000 genomes]
rs7925465	1.00[ASN][1000 genomes]
rs7931722	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938015	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939547	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942847	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949809	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv3392244	chr11:85391418-85391705	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85389000-85393200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:85389200-85392800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:85389400-85392200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:85390000-85392800	Enhancers	Fetal Lung	lung
5	chr11:85390200-85391800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:85390200-85391800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:85390200-85392000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:85390400-85391800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:85390400-85392000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:85390400-85392000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:85390400-85392000	Weak transcription	Ovary	ovary
12	chr11:85390600-85392600	Weak transcription	Fetal Kidney	kidney
13	chr11:85390600-85393200	Weak transcription	Fetal Brain Male	brain
14	chr11:85391200-85393200	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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