The 2.0 version of rSNPBase

Variant report

Variant rs1781200
Chromosome Location chr1:62922046-62922047
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62904200-62931400 Weak transcription HSMMtube muscle
2 chr1:62904200-62940000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:62904800-62931600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:62905400-62926800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:62905600-62923200 Strong transcription HUES64 Cell Line embryonic stem cell
6 chr1:62906000-62922200 Strong transcription HUES48 Cell Line embryonic stem cell
7 chr1:62906000-62923400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr1:62906000-62925200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:62906200-62923200 Strong transcription iPS-18 Cell Line embryonic stem cell
10 chr1:62906200-62923400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr1:62906400-62923400 Strong transcription Placenta Placenta
12 chr1:62906600-62922600 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr1:62907000-62923400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:62907000-62923600 Strong transcription Duodenum Smooth Muscle Duodenum
15 chr1:62907000-62928000 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr1:62907200-62923600 Strong transcription Liver Liver
17 chr1:62907200-62924000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:62907200-62924200 Strong transcription Duodenum Mucosa Duodenum
19 chr1:62907400-62924000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:62907400-62924000 Strong transcription Rectal Mucosa Donor 31 rectum
21 chr1:62907400-62924200 Strong transcription Muscle Satellite Cultured Cells --
22 chr1:62909400-62923200 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr1:62909800-62977000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:62910200-62936000 Weak transcription Aorta Aorta
25 chr1:62910800-62924000 Strong transcription Dnd41 blood
26 chr1:62911200-62924000 Strong transcription Primary hematopoietic stem cells short term culture blood
27 chr1:62911200-62924000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr1:62911400-62923800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr1:62911400-62931400 Weak transcription Fetal Brain Male brain
30 chr1:62911600-62938000 Weak transcription Placenta Amnion Placenta Amnion
31 chr1:62911800-62924600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr1:62912000-62931600 Strong transcription Breast Myoepithelial Primary Cells Breast
33 chr1:62912200-62930400 Weak transcription Ovary ovary
34 chr1:62912800-62923200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr1:62913400-62923600 Weak transcription Brain Angular Gyrus brain
36 chr1:62914400-62935400 Weak transcription Brain Substantia Nigra brain
37 chr1:62915400-62940800 Weak transcription iPS-15b Cell Line embryonic stem cell
38 chr1:62915400-62966600 Weak transcription Primary T cells fromperipheralblood blood
39 chr1:62915600-62929800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:62915600-62930400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:62915800-62937000 Weak transcription Esophagus oesophagus
42 chr1:62916000-62940800 Weak transcription Primary T helper cells PMA-I stimulated --
43 chr1:62916000-62977200 Weak transcription Right Ventricle heart
44 chr1:62916200-62960000 Weak transcription Spleen Spleen
45 chr1:62916200-62963200 Weak transcription Primary T helper naive cells fromperipheralblood blood
46 chr1:62916400-62923800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:62916400-62924000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
48 chr1:62916400-62936000 Weak transcription Left Ventricle heart
49 chr1:62916400-62940800 Weak transcription Fetal Heart heart
50 chr1:62916400-62941400 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015