Variant report

Variant	rs17813471
Chromosome Location	chr9:16680901-16680902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10756782	1.00[YRI][hapmap]
rs10810575	1.00[YRI][hapmap]
rs16934920	1.00[CEU][hapmap]
rs17740716	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892648	chr9:16661092-16680901	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription	lncRNA	n/a	inside rSNPs	diseases
9	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1030598	chr9:16680138-16696510	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16657600-16681400	Weak transcription	Psoas Muscle	Psoas
2	chr9:16665000-16704400	Weak transcription	Aorta	Aorta
3	chr9:16667200-16681000	Weak transcription	Fetal Stomach	stomach
4	chr9:16669000-16681400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:16671200-16681200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:16672000-16681400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:16674200-16681800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:16675200-16682400	Weak transcription	A549	lung
9	chr9:16679200-16681200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:16679400-16681600	Enhancers	HSMM	muscle
11	chr9:16679400-16681800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:16679600-16681800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:16679600-16682000	Enhancers	Fetal Lung	lung
14	chr9:16679600-16683400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:16679600-16693600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr9:16679800-16681000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:16679800-16681000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr9:16679800-16681000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:16679800-16681400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:16679800-16689400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:16679800-16704000	Weak transcription	HSMMtube	muscle
22	chr9:16680000-16681000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:16680000-16681000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr9:16680000-16681000	Weak transcription	Ovary	ovary
25	chr9:16680000-16681000	Enhancers	NHDF-Ad	bronchial
26	chr9:16680000-16681200	Weak transcription	NH-A	brain
27	chr9:16680000-16681400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:16680000-16681400	Weak transcription	Osteobl	bone
29	chr9:16680000-16681600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:16680000-16681800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:16680000-16688800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr9:16680000-16688800	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:16680000-16704600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:16680200-16681000	Weak transcription	HUVEC	blood vessel
35	chr9:16680200-16681000	Weak transcription	NHLF	lung
36	chr9:16680200-16681200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr9:16680600-16681800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:16680600-16681800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:16680600-16684200	Enhancers	Colon Smooth Muscle	Colon
40	chr9:16680800-16682000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:16680800-16683600	Enhancers	HUES48 Cell Line	embryonic stem cell

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