Variant report

Variant	rs1781590
Chromosome Location	chr13:67946642-67946643
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1185738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1620181	0.80[AFR][1000 genomes]
rs1760837	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1760871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1760874	1.00[EUR][1000 genomes]
rs1760875	1.00[EUR][1000 genomes]
rs1760876	1.00[EUR][1000 genomes]
rs1781572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1781574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1781576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1781577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1781586	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1781591	0.89[AFR][1000 genomes]
rs1781592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1781593	0.83[EUR][1000 genomes]
rs1781595	1.00[EUR][1000 genomes]
rs1937530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1937536	1.00[EUR][1000 genomes]
rs2325053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781308	1.00[EUR][1000 genomes]
rs6562487	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2763033	chr13:67853794-68042797	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1046032	chr13:67853794-68056887	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv527729	chr13:67854436-68047717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1047135	chr13:67857898-68044958	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3434233	chr13:67872454-68265687	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv900416	chr13:67918492-68004708	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1050865	chr13:67938796-67965130	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67942800-67947600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr13:67943400-67956400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:67945600-67946800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:67946600-67947400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr13:67946600-67947400	Enhancers	HMEC	breast
6	chr13:67946600-67947600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:67946600-67947600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:67946600-67947600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:67946600-67948000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:67946600-67948000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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