Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11884072	1.00[CEU][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11888508	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1399692	1.00[CHD][hapmap]
rs1515295	1.00[CHD][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs1515299	1.00[ASN][1000 genomes]
rs1515300	1.00[ASN][1000 genomes]
rs16866767	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16866773	1.00[CHD][hapmap];0.83[GIH][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs16866776	1.00[ASN][1000 genomes]
rs16866777	1.00[ASN][1000 genomes]
rs3112931	1.00[CHD][hapmap]
rs6433796	0.87[MEX][hapmap]
rs6709838	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73976409	1.00[ASN][1000 genomes]
rs73976410	1.00[ASN][1000 genomes]
rs73976412	1.00[ASN][1000 genomes]
rs73976413	1.00[ASN][1000 genomes]
rs7424301	1.00[ASN][1000 genomes]
rs7579911	1.00[CHD][hapmap]
rs868273	1.00[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17816284	PDE1A	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180394000-180401200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180397000-180401000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:180397800-180403600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:180398400-180402800	Weak transcription	Liver	Liver
5	chr2:180399400-180399600	Enhancers	Psoas Muscle	Psoas
6	chr2:180399400-180399800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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