Variant report

Variant	rs17818278
Chromosome Location	chr15:54532802-54532803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11629837	1.00[CHB][hapmap]
rs11636703	1.00[CHB][hapmap]
rs11637720	1.00[CHB][hapmap]
rs11638873	1.00[CHB][hapmap]
rs11855939	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs12101497	1.00[CHB][hapmap]
rs12148563	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs12438223	0.90[EUR][1000 genomes]
rs12900853	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12902903	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12903591	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs12904096	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12905451	0.94[EUR][1000 genomes]
rs12910406	0.80[CEU][hapmap]
rs12914335	0.83[AFR][1000 genomes]
rs12917023	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16953182	1.00[CHB][hapmap]
rs16974342	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16974384	1.00[CHB][hapmap]
rs16974387	1.00[CHB][hapmap]
rs16974390	1.00[CHB][hapmap]
rs16974409	1.00[CHB][hapmap]
rs16974431	1.00[CHB][hapmap]
rs16974443	1.00[CHB][hapmap]
rs16974464	1.00[CHB][hapmap]
rs34079503	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34819792	0.89[EUR][1000 genomes]
rs4502150	1.00[CHB][hapmap]
rs4776221	1.00[CHB][hapmap]
rs4776223	1.00[CHB][hapmap]
rs6493671	1.00[CHB][hapmap]
rs8028896	1.00[CHB][hapmap]
rs8039159	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1043666	chr15:54415970-54548495	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1043823	chr15:54468477-54532985	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv12090	chr15:54532412-54533030	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54519000-54554400	Weak transcription	Aorta	Aorta
2	chr15:54519400-54549600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:54531400-54544800	Weak transcription	Fetal Lung	lung

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