Variant report

Variant	rs17820827
Chromosome Location	chr9:13863722-13863723
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10810052	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961289	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10961291	1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34187448	0.83[ASN][1000 genomes]
rs34857250	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6474794	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66701167	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021523	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7029494	1.00[JPT][hapmap]
rs7038661	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1032113	chr9:13861066-13923136	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032447	chr9:13861066-13923673	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13852000-13871000	Weak transcription	Right Ventricle	heart
2	chr9:13860200-13864400	Enhancers	Adipose Nuclei	Adipose
3	chr9:13860600-13864000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:13860800-13864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:13862000-13864400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:13862200-13865000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:13862400-13865000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr9:13862600-13863800	Enhancers	Brain Substantia Nigra	brain
9	chr9:13862600-13864200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:13862600-13864200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:13862600-13865200	Enhancers	Fetal Stomach	stomach
12	chr9:13862800-13864000	Enhancers	Brain Hippocampus Middle	brain
13	chr9:13862800-13864400	Enhancers	Fetal Kidney	kidney
14	chr9:13863000-13863800	Enhancers	HSMMtube	muscle
15	chr9:13863000-13864000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:13863000-13864800	Enhancers	Fetal Lung	lung
17	chr9:13863400-13863800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:13863400-13884200	Weak transcription	Left Ventricle	heart
19	chr9:13863600-13864000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:13863600-13864000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:13863600-13864000	Weak transcription	Fetal Muscle Leg	muscle

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