Variant report

Variant	rs1782162
Chromosome Location	chr14:41763629-41763630
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:41763615-41763815	HepG2	liver:	n/a	chr14:41763736-41763747
2	CEBPB	chr14:41763620-41763791	A549	lung:	n/a	chr14:41763736-41763747
3	JUND	chr14:41763429-41763654	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000258385	TF binding region

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11157218	0.91[EUR][1000 genomes]
rs12147995	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1431041	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1611914	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1614287	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1626452	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1627127	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1652920	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1652921	0.97[EUR][1000 genomes]
rs1652922	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1652923	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1652926	0.96[EUR][1000 genomes]
rs1778365	0.91[EUR][1000 genomes]
rs1778367	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1778368	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1778369	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778379	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1778380	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1778383	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1778392	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1778411	0.92[EUR][1000 genomes]
rs1779513	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1779514	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1779515	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1779517	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1779519	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1779526	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1779527	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1779528	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1779529	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1779530	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1779531	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1779532	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1779533	0.80[AMR][1000 genomes]
rs1779534	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1779537	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1782134	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1782135	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1782139	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1782141	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1782144	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1782145	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1782154	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1782163	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1782170	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1782180	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1782181	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1782182	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1782183	0.89[AMR][1000 genomes]
rs1782184	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1782186	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1782187	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1782188	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1782189	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1782190	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1891882	0.90[EUR][1000 genomes]
rs2567024	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2798983	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2799788	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2802067	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34067347	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041122	chr14:40956143-41869421	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv564464	chr14:40957542-41871875	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv456224	chr14:41432350-42059281	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv564471	chr14:41432350-42059281	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv901706	chr14:41587669-41803232	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1048397	chr14:41620276-41770505	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1048363	chr14:41647223-41770505	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv542056	chr14:41647223-41770505	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv1831164	chr14:41673017-42103168	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1037603	chr14:41717153-41849700	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv901731	chr14:41737397-41823890	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1044831	chr14:41743218-41997018	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv542057	chr14:41743218-41997018	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv527074	chr14:41758308-41766444	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
16	nsv528669	chr14:41758308-41766444	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
17	nsv901732	chr14:41758308-41803232	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
18	nsv901733	chr14:41758308-41823890	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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