Variant report

Variant	rs17825015
Chromosome Location	chr14:63898086-63898087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63896920..63899129-chr14:63908243..63911707,3	MCF-7	breast:
2	chr14:63891605..63893344-chr14:63895975..63898430,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11850471	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1255615	0.83[CHB][hapmap];1.00[EUR][1000 genomes]
rs1255717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1255754	0.82[JPT][hapmap]
rs1255773	1.00[EUR][1000 genomes]
rs1255784	0.90[JPT][hapmap]
rs1255787	0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17101157	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs17101158	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17101167	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17225133	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs17225301	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17824943	1.00[EUR][1000 genomes]
rs17824967	1.00[EUR][1000 genomes]
rs17824991	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[EUR][1000 genomes]
rs17825003	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825021	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825057	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17825063	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17825081	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1951211	1.00[EUR][1000 genomes]
rs2144967	0.83[CHB][hapmap]
rs2180493	0.83[CHB][hapmap]
rs3783737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783742	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4147457	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7140400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73274647	1.00[EUR][1000 genomes]
rs74060078	1.00[EUR][1000 genomes]
rs74060079	1.00[EUR][1000 genomes]
rs8023046	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs964955	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv832815	chr14:63750058-63913900	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63837800-63902200	Weak transcription	Small Intestine	intestine
2	chr14:63843200-63898800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:63851200-63902400	Weak transcription	Right Ventricle	heart
4	chr14:63851200-63903600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:63851200-63922000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:63852600-63899000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:63854800-63922400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:63858400-63900000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:63859800-63901600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:63862000-63902200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:63862200-63902600	Weak transcription	Brain Angular Gyrus	brain
12	chr14:63862200-63903600	Weak transcription	HMEC	breast
13	chr14:63871800-63900000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:63872000-63898200	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:63872200-63901200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:63872600-63899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:63877400-63903200	Weak transcription	Aorta	Aorta
18	chr14:63877800-63901600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr14:63878600-63899000	Weak transcription	Fetal Stomach	stomach
20	chr14:63880800-63902000	Weak transcription	NHLF	lung
21	chr14:63880800-63902600	Weak transcription	Lung	lung
22	chr14:63880800-63904400	Weak transcription	NHEK	skin
23	chr14:63881000-63900200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr14:63881200-63898600	Weak transcription	Brain Germinal Matrix	brain
25	chr14:63881400-63902200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr14:63883600-63898200	Weak transcription	Stomach Mucosa	stomach
27	chr14:63886000-63902000	Weak transcription	Fetal Intestine Small	intestine
28	chr14:63887000-63901200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr14:63887400-63918600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr14:63887400-63918800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr14:63888200-63902200	Weak transcription	Adipose Nuclei	Adipose
32	chr14:63888400-63900400	Weak transcription	Liver	Liver
33	chr14:63888400-63902000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr14:63888400-63902200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:63888400-63902200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:63888600-63902000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr14:63888600-63902200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:63888600-63903200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr14:63888600-63903600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:63888600-63904800	Weak transcription	Dnd41	blood
41	chr14:63888800-63898800	Weak transcription	Fetal Lung	lung
42	chr14:63888800-63899800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:63888800-63901200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:63888800-63902200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr14:63889000-63898800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:63889000-63898800	Weak transcription	Brain Anterior Caudate	brain
47	chr14:63889000-63899000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:63889000-63899000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr14:63889000-63899000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:63889000-63899000	Weak transcription	HUVEC	blood vessel

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