Variant report

Variant	rs17825422
Chromosome Location	chr14:78158447-78158448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:78158386..78160675-chr14:78164018..78166983,2	MCF-7	breast:
2	chr14:78156716..78160622-chr14:78162116..78165748,3	K562	blood:
3	chr14:78157152..78158928-chr14:78163519..78165919,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258917	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1010073	0.89[AMR][1000 genomes]
rs10132900	0.95[ASN][1000 genomes]
rs10143701	0.95[ASN][1000 genomes]
rs10146621	0.95[ASN][1000 genomes]
rs17106507	0.89[AMR][1000 genomes]
rs17752308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17752428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17752707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17752869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17752882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17752950	0.95[ASN][1000 genomes]
rs17752974	0.89[AMR][1000 genomes]
rs17753231	1.00[AMR][1000 genomes]
rs17825834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17825983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17826206	1.00[AMR][1000 genomes]
rs2364	1.00[AMR][1000 genomes]
rs3783967	1.00[AMR][1000 genomes]
rs45610535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724264	0.89[AMR][1000 genomes]
rs73313116	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758362	chr14:78074180-78262572	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2759998	chr14:78074180-78262572	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	esv2757575	chr14:78104897-78212462	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv34940	chr14:78104897-78222798	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv521287	chr14:78108003-78211225	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv869872	chr14:78119527-78161340	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv520021	chr14:78152921-78208294	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17825422	ADCK1	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78127400-78173200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:78134400-78163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:78136200-78162800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:78137800-78161200	Weak transcription	Fetal Heart	heart
5	chr14:78138000-78171800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr14:78140400-78160400	Weak transcription	Fetal Kidney	kidney
7	chr14:78140400-78172400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:78140600-78158600	Weak transcription	Esophagus	oesophagus
9	chr14:78140600-78173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:78141200-78160400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:78141200-78162800	Weak transcription	Colonic Mucosa	Colon
12	chr14:78142200-78161200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:78142600-78162200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:78142600-78162800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:78145400-78158600	Weak transcription	Spleen	Spleen
16	chr14:78146400-78160000	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:78146400-78161800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:78148200-78158600	Weak transcription	Gastric	stomach
19	chr14:78148400-78158600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:78148400-78162800	Weak transcription	Aorta	Aorta
21	chr14:78148400-78162800	Weak transcription	Pancreas	Pancrea
22	chr14:78148400-78164400	Weak transcription	Psoas Muscle	Psoas
23	chr14:78148600-78162800	Weak transcription	NHLF	lung
24	chr14:78149000-78160400	Weak transcription	Hela-S3	cervix
25	chr14:78149200-78163800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:78149200-78171400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:78149800-78158600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:78149800-78163000	Weak transcription	Stomach Mucosa	stomach
29	chr14:78149800-78164200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:78150200-78163800	Strong transcription	Fetal Muscle Leg	muscle
31	chr14:78150400-78172200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:78152200-78158800	Weak transcription	Fetal Intestine Small	intestine
33	chr14:78152200-78164200	Strong transcription	Liver	Liver
34	chr14:78152200-78164600	Strong transcription	Adipose Nuclei	Adipose
35	chr14:78152400-78171200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:78152600-78172200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:78152800-78165400	Strong transcription	Placenta	Placenta
38	chr14:78152800-78171400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr14:78153400-78163000	Weak transcription	Right Ventricle	heart
40	chr14:78153400-78171200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr14:78153400-78171400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr14:78153400-78172000	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr14:78154400-78159000	Strong transcription	Fetal Stomach	stomach
44	chr14:78154400-78162600	Weak transcription	HSMMtube	muscle
45	chr14:78154400-78168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr14:78154400-78172600	Weak transcription	Small Intestine	intestine
47	chr14:78154600-78159600	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:78154600-78167200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr14:78155200-78159000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:78155400-78163600	Strong transcription	HSMM	muscle

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