Variant report

Variant	rs17831345
Chromosome Location	chr8:62052779-62052780
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61589463..61592430-chr8:62051338..62054107,2	K562	blood:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10104116	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10112795	0.81[EUR][1000 genomes]
rs1347004	0.82[EUR][1000 genomes]
rs1367973	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1367974	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs56699308	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6983455	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7017483	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs7017626	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs7824081	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026243	chr8:62039073-62101123	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62051400-62052800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:62051400-62052800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr8:62051400-62052800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:62051400-62052800	Active TSS	Brain Cingulate Gyrus	brain
5	chr8:62051400-62052800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
6	chr8:62051400-62053000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr8:62051600-62052800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr8:62051600-62052800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:62051600-62053000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr8:62051800-62052800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr8:62051800-62053000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr8:62052000-62052800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr8:62052000-62052800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
14	chr8:62052000-62052800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
15	chr8:62052000-62052800	Bivalent Enhancer	Fetal Lung	lung
16	chr8:62052200-62052800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:62052200-62052800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
18	chr8:62052200-62052800	Bivalent Enhancer	Fetal Thymus	thymus
19	chr8:62052200-62052800	Enhancers	Pancreas	Pancrea
20	chr8:62052200-62052800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
21	chr8:62052400-62052800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
22	chr8:62052400-62052800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:62052400-62052800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
24	chr8:62052400-62052800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
25	chr8:62052400-62052800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
26	chr8:62052400-62052800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
27	chr8:62052400-62052800	Bivalent Enhancer	Colon Smooth Muscle	Colon
28	chr8:62052600-62052800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:62052600-62052800	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
30	chr8:62052600-62052800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
31	chr8:62052600-62052800	Bivalent Enhancer	Primary B cells from cord blood	blood
32	chr8:62052600-62052800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
33	chr8:62052600-62052800	Bivalent Enhancer	Primary T cells from cord blood	blood
34	chr8:62052600-62052800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chr8:62052600-62052800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
36	chr8:62052600-62052800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
37	chr8:62052600-62052800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
38	chr8:62052600-62052800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
39	chr8:62052600-62052800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
40	chr8:62052600-62052800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:62052600-62052800	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr8:62052600-62052800	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr8:62052600-62052800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:62052600-62052800	Bivalent Enhancer	Fetal Intestine Large	intestine
45	chr8:62052600-62052800	Bivalent Enhancer	Fetal Intestine Small	intestine
46	chr8:62052600-62052800	Bivalent Enhancer	Stomach Mucosa	stomach
47	chr8:62052600-62052800	Enhancers	GM12878-XiMat	blood
48	chr8:62052600-62053000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links