Variant report

Variant	rs17831816
Chromosome Location	chr10:28515799-28515800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28508575..28511096-chr10:28514508..28517306,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10826445	0.82[AMR][1000 genomes]
rs10826446	0.82[AMR][1000 genomes]
rs11006923	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11006927	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006933	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006937	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006938	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006939	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11006950	0.80[CHB][hapmap];0.93[AMR][1000 genomes]
rs11006954	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11006958	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11006960	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11006964	0.87[EUR][1000 genomes]
rs11006990	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006993	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap]
rs11006994	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006997	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006999	0.86[AMR][1000 genomes]
rs11007000	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11007003	0.82[CHB][hapmap]
rs12570440	1.00[EUR][1000 genomes]
rs2368306	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35016093	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3842931	0.80[CHB][hapmap]
rs3847387	0.82[AMR][1000 genomes]
rs4598572	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901835	0.82[AMR][1000 genomes]
rs7903242	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs7916711	0.82[AMR][1000 genomes]
rs7916740	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv831817	chr10:28369836-28539930	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28467600-28525600	Weak transcription	Aorta	Aorta
2	chr10:28487600-28529000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:28491200-28523200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:28498200-28531200	Weak transcription	Primary B cells from cord blood	blood
5	chr10:28498200-28537000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:28502000-28531600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:28502400-28523000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:28502400-28525000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:28506000-28516000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:28507200-28528600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:28507400-28516000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:28507400-28516800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:28507400-28522000	Weak transcription	Primary T cells from cord blood	blood
14	chr10:28507400-28525400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:28507400-28530600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:28507600-28531000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:28509800-28524000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:28510200-28523200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:28510800-28530400	Weak transcription	HSMMtube	muscle
20	chr10:28511000-28528800	Weak transcription	Fetal Heart	heart
21	chr10:28515600-28516800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:28515600-28517600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr10:28515600-28528000	Weak transcription	Gastric	stomach

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