Variant report

Variant	rs17833244
Chromosome Location	chr3:99342207-99342208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16841758	1.00[AFR][1000 genomes]
rs17776773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17777478	1.00[AFR][1000 genomes]
rs17826006	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99339200-99343600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:99340400-99344200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:99340400-99346000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:99340600-99344000	Weak transcription	NHDF-Ad	bronchial
6	chr3:99340800-99343000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:99341000-99343400	Weak transcription	Hela-S3	cervix
8	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
9	chr3:99341400-99344400	Weak transcription	HUVEC	blood vessel
10	chr3:99341800-99342400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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