Variant report

Variant	rs17833787
Chromosome Location	chr6:119849394-119849395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1392089	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56735342	0.91[AFR][1000 genomes]
rs57294964	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73771018	0.91[AFR][1000 genomes]
rs73771023	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018182	chr6:119833609-119866803	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119825800-119850200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:119847800-119849600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:119847800-119849800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:119848000-119849400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:119848000-119849600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:119848000-119849600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:119848600-119851800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:119848800-119849400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:119849000-119849800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:119849000-119854000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:119849200-119849400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr6:119849200-119854200	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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