Variant report

Variant	rs1783559
Chromosome Location	chr11:75217028-75217029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75172501..75175178-chr11:75216846..75218969,2	K562	blood:
2	chr11:75196940..75199795-chr11:75215143..75217908,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1540210	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs1540211	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs1783557	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790144	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1790152	1.00[JPT][hapmap]
rs1793397	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2853066	1.00[JPT][hapmap]
rs504793	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs514477	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs549034	1.00[JPT][hapmap]
rs550881	1.00[JPT][hapmap]
rs581007	1.00[JPT][hapmap]
rs589724	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs667410	1.00[JPT][hapmap]
rs682292	1.00[JPT][hapmap];0.80[YRI][hapmap]
rs947844	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75200000-75219600	Weak transcription	Fetal Brain Female	brain
2	chr11:75203800-75217800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:75203800-75219200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:75210400-75219400	Weak transcription	Pancreas	Pancrea
5	chr11:75211200-75219800	Weak transcription	Esophagus	oesophagus
6	chr11:75211400-75217800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:75211400-75218200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:75212200-75218400	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:75212600-75219200	Weak transcription	A549	lung
10	chr11:75212600-75227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:75212800-75217400	Weak transcription	Spleen	Spleen
12	chr11:75213000-75217200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:75214600-75217800	Genic enhancers	Placenta	Placenta
14	chr11:75214800-75217200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:75215000-75218000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:75215200-75218400	Weak transcription	GM12878-XiMat	blood
17	chr11:75215400-75218000	Genic enhancers	HepG2	liver
18	chr11:75215600-75217800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:75215600-75219400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:75215600-75223600	Enhancers	Adipose Nuclei	Adipose
21	chr11:75215800-75222000	Enhancers	Fetal Intestine Large	intestine
22	chr11:75216000-75222600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:75216200-75233600	Genic enhancers	Fetal Intestine Small	intestine
24	chr11:75216400-75217200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:75216400-75218400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:75216400-75218400	Enhancers	Left Ventricle	heart
27	chr11:75216400-75218800	Enhancers	Psoas Muscle	Psoas
28	chr11:75216400-75219800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:75216400-75221600	Enhancers	Fetal Muscle Leg	muscle
30	chr11:75216400-75221800	Enhancers	Fetal Muscle Trunk	muscle
31	chr11:75216400-75222000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:75216600-75217200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:75216600-75217200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr11:75216600-75217400	Enhancers	Colon Smooth Muscle	Colon
35	chr11:75216600-75217400	Enhancers	K562	blood
36	chr11:75216600-75217800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr11:75216600-75218400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:75216600-75218400	Enhancers	Fetal Stomach	stomach
39	chr11:75216600-75219000	Enhancers	Right Atrium	heart
40	chr11:75216600-75219800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:75216800-75217600	Enhancers	Brain Angular Gyrus	brain
42	chr11:75216800-75217800	Enhancers	Brain Anterior Caudate	brain
43	chr11:75216800-75217800	Enhancers	Brain Substantia Nigra	brain
44	chr11:75216800-75218400	Active TSS	Stomach Smooth Muscle	stomach
45	chr11:75217000-75217200	Enhancers	Brain Cingulate Gyrus	brain
46	chr11:75217000-75217200	Enhancers	Rectal Smooth Muscle	rectum
47	chr11:75217000-75217200	Enhancers	HSMMtube	muscle
48	chr11:75217000-75217400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:75217000-75217800	Enhancers	Ovary	ovary
50	chr11:75217000-75218000	Enhancers	Brain Hippocampus Middle	brain

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