Variant report

Variant	rs17836088
Chromosome Location	chr14:79932041-79932042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10136360	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10145154	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10146690	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10146997	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10150332	0.95[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150482	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17109221	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17109256	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2370982	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7144011	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7156625	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72690737	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8008910	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8020365	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79927200-79933000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:79927600-79933200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:79927600-79944800	Weak transcription	Aorta	Aorta
4	chr14:79927800-79933200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:79927800-79944000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr14:79930800-79932400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:79931000-79933800	Enhancers	HSMM	muscle
8	chr14:79931200-79933600	Weak transcription	Fetal Lung	lung
9	chr14:79931600-79932200	Enhancers	HSMMtube	muscle
10	chr14:79931800-79942400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:79932000-79932600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links