Variant report

Variant	rs17836809
Chromosome Location	chr14:68076634-68076635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17249437	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1885042	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1997896	0.80[JPT][hapmap]
rs3742878	0.93[CEU][hapmap]
rs3759757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6573788	0.95[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs7151920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8012815	0.95[CEU][hapmap]
rs8013117	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17836809	RDH11	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68074800-68077600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:68075000-68077200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr14:68075400-68077000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
4	chr14:68075400-68077400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr14:68075600-68076800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr14:68075800-68077600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
7	chr14:68076000-68076800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:68076000-68076800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:68076000-68077200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr14:68076200-68076800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:68076200-68076800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr14:68076200-68077000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:68076200-68077600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr14:68076600-68076800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
15	chr14:68076600-68076800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:68076600-68076800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:68076600-68076800	Flanking Bivalent TSS/Enh	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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