Variant report

Variant	rs17837200
Chromosome Location	chr13:51776736-51776737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11617882	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11618500	0.88[EUR][1000 genomes]
rs1557005	0.84[EUR][1000 genomes]
rs1571108	1.00[EUR][1000 genomes]
rs17252034	0.82[EUR][1000 genomes]
rs17837198	1.00[EUR][1000 genomes]
rs2031656	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57423635	1.00[EUR][1000 genomes]
rs73194165	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194171	0.99[EUR][1000 genomes]
rs73194172	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194176	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73194177	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73194179	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51774400-51785800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:51776200-51777800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:51776200-51777800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:51776200-51778000	Enhancers	HUVEC	blood vessel
5	chr13:51776600-51776800	Enhancers	NHDF-Ad	bronchial
6	chr13:51776600-51777200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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