Variant report

Variant	rs17837207
Chromosome Location	chr13:51839336-51839337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11617293	0.95[JPT][hapmap]
rs1475377	0.89[JPT][hapmap]
rs17837210	0.84[JPT][hapmap]
rs3825409	0.95[JPT][hapmap]
rs4942985	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs58934553	0.80[ASN][1000 genomes]
rs73194192	0.86[EUR][1000 genomes]
rs73194195	0.81[ASN][1000 genomes]
rs73194198	0.98[ASN][1000 genomes]
rs9596491	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17837207	RNASEH2B	cis	brain	BrainEAC

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51821600-51845000	Weak transcription	Fetal Brain Male	brain
2	chr13:51824200-51844000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:51825400-51840600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr13:51826400-51854600	Weak transcription	Aorta	Aorta
5	chr13:51832800-51843200	Weak transcription	Fetal Lung	lung
6	chr13:51833400-51839400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:51833600-51860400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:51834000-51845200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:51834000-51850800	Weak transcription	Pancreas	Pancrea
10	chr13:51834200-51839400	Weak transcription	Lung	lung
11	chr13:51834200-51856400	Weak transcription	Gastric	stomach
12	chr13:51836000-51845600	Weak transcription	Fetal Brain Female	brain
13	chr13:51836200-51841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr13:51836200-51843000	Weak transcription	Ovary	ovary
15	chr13:51836200-51850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr13:51836400-51840600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:51836600-51844600	Weak transcription	Brain Germinal Matrix	brain
18	chr13:51837200-51839800	Genic enhancers	Brain Hippocampus Middle	brain
19	chr13:51837200-51840400	Weak transcription	Colon Smooth Muscle	Colon
20	chr13:51837200-51840600	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr13:51837200-51843000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr13:51837200-51844600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr13:51837200-51850400	Weak transcription	Adipose Nuclei	Adipose
24	chr13:51837400-51840200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr13:51837400-51840400	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr13:51837400-51840600	Weak transcription	Fetal Muscle Leg	muscle
27	chr13:51837400-51840600	Weak transcription	Right Atrium	heart
28	chr13:51837400-51840800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr13:51837400-51841200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr13:51837400-51845200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr13:51837600-51839400	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr13:51837600-51840000	Strong transcription	H9 Cell Line	embryonic stem cell
33	chr13:51837600-51840000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr13:51837600-51840000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr13:51837600-51840400	Weak transcription	Brain Anterior Caudate	brain
36	chr13:51837600-51840600	Weak transcription	Brain Angular Gyrus	brain
37	chr13:51837600-51840600	Weak transcription	Left Ventricle	heart
38	chr13:51837600-51841200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr13:51837600-51842000	Weak transcription	Right Ventricle	heart
40	chr13:51837600-51852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr13:51837800-51839800	Weak transcription	Brain Substantia Nigra	brain
42	chr13:51837800-51842000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr13:51837800-51842200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr13:51837800-51842600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr13:51837800-51860400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:51838200-51839400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr13:51838400-51839400	Weak transcription	Fetal Stomach	stomach
48	chr13:51838400-51839600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
49	chr13:51838400-51839600	Genic enhancers	Spleen	Spleen
50	chr13:51838800-51843200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links