Variant report

Variant	rs17837497
Chromosome Location	chr7:139702593-139702594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:139184879..139185566-chr7:139701830..139702738,3	K562	blood:
2	chr7:139303752..139304279-chr7:139701798..139702785,3	K562	blood:
3	chr7:139476252..139479236-chr7:139700907..139703639,3	MCF-7	breast:
4	chr7:139190051..139190952-chr7:139701788..139702823,5	K562	blood:
5	chr7:139475446..139476273-chr7:139701791..139702721,7	K562	blood:
6	chr7:139303577..139304236-chr7:139701800..139702755,4	MCF-7	breast:
7	chr7:139330154..139331825-chr7:139701766..139702752,11	K562	blood:
8	chr7:139305722..139306254-chr7:139702042..139702667,2	MCF-7	breast:
9	chr7:139614831..139616471-chr7:139701068..139703732,2	K562	blood:
10	chr7:139474504..139476170-chr7:139702174..139703721,2	K562	blood:
11	chr7:139700628..139703211-chr7:139704425..139707140,2	K562	blood:
12	chr7:139330341..139331994-chr7:139701505..139702725,13	MCF-7	breast:
13	chr7:139286649..139287354-chr7:139702212..139702814,2	MCF-7	breast:
14	chr7:139286598..139287515-chr7:139701781..139702828,8	K562	blood:
15	chr7:139465353..139468233-chr7:139701916..139703718,2	K562	blood:
16	chr7:139329473..139330144-chr7:139702092..139702744,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000059377	Chromatin interaction
ENSG00000064393	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58009381	1.00[AFR][1000 genomes]
rs719467	1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs73734177	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019001	chr7:139558216-139841268	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1029099	chr7:139558216-139869148	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1828807	chr7:139675550-139727974	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv608476	chr7:139696248-139717200	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv608477	chr7:139697043-139718147	Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Acute lymphoblastic leukemia (childhood)	23007406	GWAS catalog

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139672000-139704400	Weak transcription	Lung	lung
2	chr7:139681000-139717800	Weak transcription	Thymus	Thymus
3	chr7:139690800-139705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:139691200-139706000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:139692000-139706400	Weak transcription	Spleen	Spleen
6	chr7:139693200-139729000	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:139695000-139707400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:139695200-139721600	Weak transcription	Colonic Mucosa	Colon
9	chr7:139695400-139706000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:139695600-139703800	Weak transcription	A549	lung
11	chr7:139695800-139705400	Weak transcription	Fetal Heart	heart
12	chr7:139695800-139706400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:139695800-139709000	Weak transcription	Gastric	stomach
14	chr7:139699000-139707200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:139699200-139706400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:139699800-139703600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:139700800-139702600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr7:139701200-139703600	Weak transcription	HepG2	liver
19	chr7:139701600-139702600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:139701800-139702600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr7:139702200-139703600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:139702200-139712000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:139702200-139721800	Weak transcription	Fetal Thymus	thymus
24	chr7:139702400-139702600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:139702400-139722400	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links