Variant report

Variant	rs17838981
Chromosome Location	chr4:74440552-74440553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10003721	0.81[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1247669	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs16849717	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1919471	0.96[GIH][hapmap]
rs2272427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3756068	0.81[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.98[MKK][hapmap];0.90[TSI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55783483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863058	0.91[ASN][1000 genomes]
rs7658159	1.00[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1792624	chr4:74437054-74453857	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74438000-74464800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:74439000-74448400	Weak transcription	Fetal Intestine Large	intestine
3	chr4:74439400-74442200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:74439600-74441200	Genic enhancers	Fetal Thymus	thymus
5	chr4:74439800-74448600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:74440200-74441000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:74440200-74441400	Weak transcription	HMEC	breast
8	chr4:74440200-74441800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:74440200-74442200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:74440200-74443000	Weak transcription	Stomach Mucosa	stomach
11	chr4:74440200-74443200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:74440200-74444600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:74440200-74447000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:74440200-74447000	Weak transcription	Thymus	Thymus
15	chr4:74440200-74449000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:74440200-74449600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:74440200-74451200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:74440200-74455200	Weak transcription	Fetal Intestine Small	intestine
19	chr4:74440200-74457400	Weak transcription	Pancreas	Pancrea
20	chr4:74440200-74472600	Weak transcription	Gastric	stomach
21	chr4:74440400-74442000	Weak transcription	Dnd41	blood

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