Variant report

Variant	rs17839705
Chromosome Location	chr5:126424560-126424561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126414653..126417041-chr5:126422824..126425859,3	MCF-7	breast:
2	chr5:126363750..126366012-chr5:126422461..126424754,3	K562	blood:

Variant related genes	Relation type
ENSG00000173926	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12656537	0.82[JPT][hapmap]
rs17592844	0.81[EUR][1000 genomes]
rs4608976	0.87[CEU][hapmap];1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1816248	chr5:126399039-126486539	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126412600-126427400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:126413600-126428000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:126416800-126428200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:126419200-126424800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:126419400-126428000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:126419600-126424600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:126420600-126427800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:126421400-126425400	Enhancers	Fetal Intestine Large	intestine
9	chr5:126421800-126425400	Enhancers	Fetal Intestine Small	intestine
10	chr5:126422200-126424600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:126423000-126425200	Enhancers	NHLF	lung
12	chr5:126423000-126425400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:126423200-126425000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:126423200-126425000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:126423200-126428200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:126423400-126424600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:126423400-126424600	Enhancers	NHEK	skin
18	chr5:126423400-126424800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:126423400-126424800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr5:126423400-126424800	Enhancers	Placenta	Placenta
21	chr5:126423400-126425000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:126423400-126425000	Enhancers	NH-A	brain
23	chr5:126423400-126425200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:126423400-126425200	Enhancers	HMEC	breast
25	chr5:126423400-126425200	Enhancers	HSMM	muscle
26	chr5:126423400-126425200	Enhancers	NHDF-Ad	bronchial
27	chr5:126423400-126425200	Enhancers	Osteobl	bone
28	chr5:126423600-126424600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:126423600-126424600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:126424000-126424800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:126424000-126425400	Enhancers	Fetal Thymus	thymus
32	chr5:126424000-126425400	Enhancers	Thymus	Thymus
33	chr5:126424200-126424600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:126424200-126424600	Enhancers	Hela-S3	cervix
35	chr5:126424200-126424800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:126424200-126425000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr5:126424200-126425200	Enhancers	HSMMtube	muscle
38	chr5:126424400-126425000	Enhancers	H1 Cell Line	embryonic stem cell
39	chr5:126424400-126425400	Enhancers	Primary T cells from cord blood	blood

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