Variant report

Variant	rs17840518
Chromosome Location	chr7:128142427-128142428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128139891..128142505-chr7:128169322..128171236,2	MCF-7	breast:
2	chr7:128140732..128143190-chr7:128377049..128379381,2	K562	blood:

Variant related genes	Relation type
ENSG00000128595	Chromatin interaction
ENSG00000273270	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv966883	chr7:128107081-128142581	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
3	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:128118000-128146400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:128118000-128146400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:128118200-128146400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:128118400-128147000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:128121400-128147000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:128121800-128143800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:128128800-128142800	Strong transcription	Fetal Intestine Small	intestine
13	chr7:128128800-128143400	Weak transcription	HepG2	liver
14	chr7:128132000-128145000	Strong transcription	Fetal Stomach	stomach
15	chr7:128132800-128143000	Strong transcription	Placenta	Placenta
16	chr7:128132800-128143800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:128133000-128143600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:128133400-128142600	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:128133400-128142600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:128133400-128142600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr7:128133400-128142800	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr7:128133400-128142800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:128133400-128144000	Strong transcription	Adipose Nuclei	Adipose
24	chr7:128133600-128142600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:128133600-128142600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:128133600-128142800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr7:128133600-128143000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:128133600-128143800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:128133600-128144600	Strong transcription	Fetal Thymus	thymus
30	chr7:128133800-128142600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr7:128133800-128142600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:128133800-128142800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:128133800-128143200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr7:128135600-128143200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr7:128136000-128143200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:128137800-128143400	Weak transcription	A549	lung
37	chr7:128138000-128143200	Weak transcription	NHLF	lung
38	chr7:128138000-128147200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr7:128138000-128147800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr7:128138200-128143600	Weak transcription	HSMMtube	muscle
41	chr7:128138200-128146400	Weak transcription	Brain Substantia Nigra	brain
42	chr7:128138200-128147600	Weak transcription	Small Intestine	intestine
43	chr7:128138400-128143400	Weak transcription	Esophagus	oesophagus
44	chr7:128138400-128143800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:128138400-128145200	Weak transcription	Right Ventricle	heart
46	chr7:128139000-128142600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr7:128139000-128142600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:128139200-128142600	Strong transcription	Fetal Intestine Large	intestine
49	chr7:128139200-128143200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:128139400-128142600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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