Variant report

Variant	rs1784926
Chromosome Location	chr11:121347097-121347098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121330064..121332974-chr11:121346405..121349549,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs511170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs512892	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs539842	1.00[AMR][1000 genomes]
rs593684	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs599920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs610188	1.00[AMR][1000 genomes]
rs610258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121337400-121349400	Weak transcription	Ovary	ovary
2	chr11:121337400-121350600	Weak transcription	Left Ventricle	heart
3	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
4	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
5	chr11:121338200-121348800	Weak transcription	Colonic Mucosa	Colon
6	chr11:121338200-121349000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:121339000-121349200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:121339000-121358200	Weak transcription	Aorta	Aorta
9	chr11:121339200-121347200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:121339200-121348200	Weak transcription	Pancreas	Pancrea
11	chr11:121339200-121348800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:121339200-121349000	Weak transcription	Lung	lung
13	chr11:121339200-121349000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:121339800-121347200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:121339800-121351000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr11:121339800-121351000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:121340000-121348200	Weak transcription	Esophagus	oesophagus
18	chr11:121340000-121349000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:121340400-121349400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:121340600-121348400	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr11:121340800-121349000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
22	chr11:121340800-121351400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:121341000-121348200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:121341000-121349600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:121341200-121349000	Strong transcription	Primary hematopoietic stem cells	blood
26	chr11:121342200-121347200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:121342200-121348600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:121342200-121349000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:121342400-121347200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:121342400-121347400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:121342400-121347600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:121342400-121353000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:121342600-121349000	Weak transcription	Primary B cells from cord blood	blood
34	chr11:121342600-121349600	Weak transcription	Fetal Stomach	stomach
35	chr11:121342800-121348000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:121342800-121348200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:121342800-121348600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr11:121342800-121348600	Weak transcription	Spleen	Spleen
39	chr11:121342800-121348800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:121343000-121348200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:121343000-121348800	Weak transcription	Fetal Lung	lung
42	chr11:121343000-121348800	Weak transcription	Thymus	Thymus
43	chr11:121343400-121348800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:121343800-121349000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:121343800-121349200	Weak transcription	Fetal Brain Male	brain
46	chr11:121344200-121349000	Weak transcription	Brain Angular Gyrus	brain
47	chr11:121344200-121349000	Weak transcription	Fetal Brain Female	brain
48	chr11:121344200-121358200	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:121344400-121348800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:121344400-121349000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links