Variant report

Variant	rs1784927
Chromosome Location	chr11:121395790-121395791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121394952..121397845-chr11:121402753..121405692,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12798073	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs523917	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs550469	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs560573	0.85[CEU][hapmap]
rs593769	0.85[CEU][hapmap]
rs596437	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs599161	0.85[EUR][1000 genomes]
rs617847	0.81[JPT][hapmap]
rs624310	0.85[CEU][hapmap]
rs633197	0.83[EUR][1000 genomes]
rs641120	0.89[CEU][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs652067	0.85[CEU][hapmap]
rs656338	0.86[EUR][1000 genomes]
rs662821	0.81[CEU][hapmap];0.81[CHB][hapmap]
rs668387	0.88[CEU][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs676759	0.85[CEU][hapmap]
rs687228	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs689021	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs693855	0.81[CHB][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs923892	0.88[CEU][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
2	chr11:121368400-121395800	Weak transcription	Fetal Kidney	kidney
3	chr11:121369000-121396800	Weak transcription	Ovary	ovary
4	chr11:121377400-121396400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:121378000-121395800	Strong transcription	Primary T cells from cord blood	blood
6	chr11:121378400-121397800	Strong transcription	HepG2	liver
7	chr11:121379200-121395800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:121379400-121395800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:121379400-121398000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:121381000-121397000	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr11:121382800-121396600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:121383000-121398800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:121384000-121396200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:121385600-121396000	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:121385600-121396800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:121385600-121418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:121386200-121396200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:121386200-121396600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:121386400-121396200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr11:121389200-121396400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:121389600-121395800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:121390400-121396600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr11:121390800-121396200	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:121391000-121396600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:121391200-121395800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr11:121391200-121396600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr11:121391400-121396000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:121391400-121397200	Strong transcription	Liver	Liver
29	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:121391600-121396400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:121391600-121396600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:121391800-121395800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:121392400-121396600	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:121392400-121396600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:121392400-121414800	Weak transcription	Stomach Mucosa	stomach
36	chr11:121392600-121395800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr11:121392800-121395800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:121392800-121396400	Weak transcription	Left Ventricle	heart
39	chr11:121393400-121396200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:121393400-121414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:121393600-121396400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:121393600-121396600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:121393600-121415400	Weak transcription	Colonic Mucosa	Colon
44	chr11:121394000-121396600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:121394000-121396800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:121394600-121396000	Weak transcription	Fetal Brain Female	brain
47	chr11:121394600-121396000	Strong transcription	Fetal Lung	lung
48	chr11:121394600-121396600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
49	chr11:121394600-121397400	ZNF genes & repeats	GM12878-XiMat	blood
50	chr11:121394800-121396200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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