Variant report

Variant	rs17852856
Chromosome Location	chr10:22048140-22048141
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22046761..22048498-chr10:22055070..22057149,2	K562	blood:
2	chr10:22042388..22046102-chr10:22047917..22049618,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11012736	1.00[CHB][hapmap]
rs7085638	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052464	chr10:21856531-22220087	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1802317	chr10:21866085-22288132	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv894947	chr10:21869609-22117913	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv550203	chr10:21916468-22062729	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv540513	chr10:22031022-22065456	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22028200-22056600	Weak transcription	Hela-S3	cervix
2	chr10:22029400-22053000	Weak transcription	Colonic Mucosa	Colon
3	chr10:22034000-22049800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:22034000-22052600	Weak transcription	Primary B cells from cord blood	blood
5	chr10:22034400-22049200	Weak transcription	Brain Germinal Matrix	brain
6	chr10:22034400-22049200	Weak transcription	A549	lung
7	chr10:22034400-22049800	Weak transcription	Brain Anterior Caudate	brain
8	chr10:22034400-22051000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr10:22034400-22054200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:22034400-22057600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:22034400-22074000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:22035800-22050000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:22036000-22053000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:22036000-22053200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:22036200-22049600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:22036200-22050200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:22036200-22052600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr10:22036200-22052800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:22036200-22066600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:22036600-22052800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:22039800-22049800	Weak transcription	Esophagus	oesophagus
22	chr10:22041200-22049400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:22041200-22055400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:22041800-22049000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:22042200-22048800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:22042800-22049600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:22043600-22049000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:22043600-22049000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:22043600-22049400	Strong transcription	Liver	Liver
30	chr10:22043600-22049800	Strong transcription	Fetal Intestine Small	intestine
31	chr10:22043800-22053800	Weak transcription	Fetal Thymus	thymus
32	chr10:22044000-22049600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:22044600-22048400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr10:22045000-22048800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr10:22045400-22048600	Strong transcription	Gastric	stomach
36	chr10:22045600-22048200	Enhancers	Fetal Lung	lung
37	chr10:22045600-22048600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:22045600-22048800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr10:22045800-22048200	Strong transcription	Thymus	Thymus
40	chr10:22045800-22048400	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr10:22046000-22048200	Strong transcription	Primary T cells from cord blood	blood
42	chr10:22046000-22048400	Genic enhancers	Fetal Stomach	stomach
43	chr10:22046200-22048800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:22046400-22048200	Strong transcription	Fetal Brain Female	brain
45	chr10:22046400-22048600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:22046400-22049400	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr10:22046600-22048600	Strong transcription	Brain Hippocampus Middle	brain
48	chr10:22046800-22048200	Strong transcription	Right Ventricle	heart
49	chr10:22046800-22048400	Strong transcription	Brain Substantia Nigra	brain
50	chr10:22046800-22048800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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