Variant report

Variant	rs17855896
Chromosome Location	chr14:39764176-39764177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39763084..39765244-chr14:39767699..39769276,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs41317314	1.00[ASN][1000 genomes]
rs55706043	0.85[EUR][1000 genomes]
rs55918207	1.00[AFR][1000 genomes]
rs56225465	1.00[AFR][1000 genomes]
rs72673340	1.00[AFR][1000 genomes]
rs72673381	0.83[EUR][1000 genomes]
rs72673384	0.85[EUR][1000 genomes]
rs72673387	0.85[EUR][1000 genomes]
rs72673388	0.85[EUR][1000 genomes]
rs72673401	1.00[AFR][1000 genomes]
rs72675455	1.00[AFR][1000 genomes]
rs72675488	1.00[AFR][1000 genomes]
rs72677634	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72677647	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv977461	chr14:39762414-39770640	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39738200-39766200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:39738200-39813800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:39738800-39764800	Weak transcription	NHDF-Ad	bronchial
4	chr14:39739800-39766400	Weak transcription	Aorta	Aorta
5	chr14:39741200-39764200	Weak transcription	Spleen	Spleen
6	chr14:39744600-39769800	Weak transcription	Pancreas	Pancrea
7	chr14:39746200-39776600	Weak transcription	K562	blood
8	chr14:39746400-39771200	Weak transcription	Fetal Heart	heart
9	chr14:39749400-39764200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:39749400-39766400	Weak transcription	Right Ventricle	heart
11	chr14:39749400-39785400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:39749600-39765200	Weak transcription	HUVEC	blood vessel
13	chr14:39749600-39771200	Weak transcription	Fetal Kidney	kidney
14	chr14:39752600-39764200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:39752600-39764200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:39752600-39769000	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:39752600-39808200	Weak transcription	Stomach Mucosa	stomach
18	chr14:39753000-39764200	Weak transcription	A549	lung
19	chr14:39755400-39775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr14:39755400-39783400	Strong transcription	Liver	Liver
21	chr14:39755600-39767600	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr14:39755600-39780400	Strong transcription	HepG2	liver
23	chr14:39755600-39797200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr14:39756000-39764600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:39756000-39788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:39756200-39776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:39756200-39828400	Weak transcription	Brain Germinal Matrix	brain
28	chr14:39756400-39773200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr14:39756400-39774000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr14:39756600-39819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:39756800-39771200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr14:39756800-39797800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr14:39757000-39783400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:39757200-39773800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:39757400-39764200	Weak transcription	Ovary	ovary
36	chr14:39757400-39771200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:39757400-39796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:39757400-39843800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:39758400-39767600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:39758600-39764200	Weak transcription	Psoas Muscle	Psoas
41	chr14:39758600-39767400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:39758800-39764200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:39758800-39766000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr14:39759400-39770200	Weak transcription	Colonic Mucosa	Colon
45	chr14:39759400-39801800	Weak transcription	NHLF	lung
46	chr14:39760000-39775800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:39760600-39765600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr14:39760600-39767400	Strong transcription	Adipose Nuclei	Adipose
49	chr14:39760600-39767400	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr14:39760800-39771200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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