Variant report

Variant	rs1785886
Chromosome Location	chr11:104928492-104928493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1212544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs472938	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs477328	1.00[AMR][1000 genomes]
rs497874	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs499695	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs503323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs532391	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs532462	1.00[AMR][1000 genomes]
rs538152	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs557371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs571589	1.00[AMR][1000 genomes]
rs578537	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs579663	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2757475	chr11:104895876-104979717	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2759863	chr11:104895876-104979717	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv517089	chr11:104915563-104930676	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
11	nsv470	chr11:104916361-104961230	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	n/a
12	nsv8870	chr11:104920350-104932482	Weak transcription Enhancers Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
13	nsv972954	chr11:104920429-104931448	Enhancers Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
14	esv2760182	chr11:104922670-104931988	Enhancers Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
15	esv3465930	chr11:104923228-104931503	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
16	esv3465953	chr11:104923253-104931477	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3465941	chr11:104923281-104931434	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv3465919	chr11:104923329-104931465	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
19	esv3465964	chr11:104923350-104931394	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv20753	chr11:104923420-104931406	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv2421755	chr11:104923862-104931233	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
22	nsv442626	chr11:104923862-104931233	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
23	esv3693099	chr11:104923951-104930676	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
24	nsv818862	chr11:104924246-104930676	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
25	nsv514588	chr11:104924726-104931102	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104926400-104931600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:104927000-104929200	Enhancers	HepG2	liver
3	chr11:104927000-104936200	Weak transcription	Small Intestine	intestine
4	chr11:104928400-104928800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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