Variant report

Variant	rs17860332
Chromosome Location	chr12:51729327-51729328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51475949..51477660-chr12:51729018..51730788,2	K562	blood:
2	chr12:51726670..51729630-chr12:51730629..51732198,2	K562	blood:
3	chr12:51662651..51666835-chr12:51728817..51731606,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110925	Chromatin interaction
ENSG00000170545	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12298477	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12309916	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12317091	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12322804	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17125635	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17860384	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2071453	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4026022	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7138439	0.83[ASN][1000 genomes]
rs72644880	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482304	chr12:51653496-51814917	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv469377	chr12:51690751-51733951	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv558877	chr12:51690751-51733951	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv832408	chr12:51696605-51871339	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51720800-51735000	Weak transcription	Esophagus	oesophagus
2	chr12:51721200-51735000	Weak transcription	NHDF-Ad	bronchial
3	chr12:51722600-51735000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr12:51724200-51735000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:51724400-51734800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr12:51724400-51739200	Weak transcription	Thymus	Thymus
7	chr12:51725400-51735000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:51726000-51734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:51726200-51729800	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr12:51727800-51729600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr12:51728000-51729800	Weak transcription	Hela-S3	cervix
12	chr12:51728000-51730400	Weak transcription	K562	blood
13	chr12:51728200-51735000	Weak transcription	Colonic Mucosa	Colon
14	chr12:51728400-51729400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr12:51728400-51731000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr12:51728400-51731200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:51728600-51731000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr12:51728800-51731000	Enhancers	Primary hematopoietic stem cells	blood
19	chr12:51728800-51731000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr12:51728800-51735000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr12:51729000-51730800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:51729000-51730800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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