Variant report

Variant	rs17860337
Chromosome Location	chr12:51728464-51728465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51726670..51729630-chr12:51730629..51732198,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10783438	1.00[EUR][1000 genomes]
rs12578858	1.00[EUR][1000 genomes]
rs12579126	1.00[EUR][1000 genomes]
rs12579841	1.00[EUR][1000 genomes]
rs12580621	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12581208	1.00[EUR][1000 genomes]
rs12582216	1.00[EUR][1000 genomes]
rs17860267	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17860283	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17860320	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2067764	1.00[EUR][1000 genomes]
rs3741700	1.00[EUR][1000 genomes]
rs3889974	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58448629	1.00[EUR][1000 genomes]
rs60044798	1.00[EUR][1000 genomes]
rs61612083	1.00[EUR][1000 genomes]
rs73309782	1.00[EUR][1000 genomes]
rs73309783	1.00[EUR][1000 genomes]
rs73309787	1.00[EUR][1000 genomes]
rs73309789	1.00[EUR][1000 genomes]
rs73309790	1.00[EUR][1000 genomes]
rs73311613	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482304	chr12:51653496-51814917	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv469377	chr12:51690751-51733951	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv558877	chr12:51690751-51733951	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv832408	chr12:51696605-51871339	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51720800-51728600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:51720800-51735000	Weak transcription	Esophagus	oesophagus
3	chr12:51721200-51735000	Weak transcription	NHDF-Ad	bronchial
4	chr12:51722600-51735000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:51724200-51735000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:51724400-51728600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:51724400-51728600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr12:51724400-51728600	Weak transcription	Fetal Thymus	thymus
9	chr12:51724400-51728800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr12:51724400-51728800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:51724400-51734800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:51724400-51739200	Weak transcription	Thymus	Thymus
13	chr12:51725400-51735000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr12:51726000-51734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr12:51726200-51729800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr12:51727600-51728800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr12:51727800-51729600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr12:51728000-51729800	Weak transcription	Hela-S3	cervix
19	chr12:51728000-51730400	Weak transcription	K562	blood
20	chr12:51728200-51735000	Weak transcription	Colonic Mucosa	Colon
21	chr12:51728400-51729400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr12:51728400-51731000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr12:51728400-51731200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links