Variant report

Variant	rs17861046
Chromosome Location	chr20:21693024-21693025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13039232	1.00[AMR][1000 genomes]
rs17861040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2876613	1.00[AMR][1000 genomes]
rs6047611	1.00[AMR][1000 genomes]
rs6047614	1.00[AMR][1000 genomes]
rs7264084	1.00[AMR][1000 genomes]
rs7266680	1.00[AMR][1000 genomes]
rs7270607	1.00[AMR][1000 genomes]
rs8118731	1.00[AMR][1000 genomes]
rs8121350	1.00[AMR][1000 genomes]
rs8122115	1.00[AMR][1000 genomes]
rs8122299	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:21693000-21693200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
2	chr20:21693000-21694600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:21693000-21694600	Bivalent/Poised TSS	Fetal Thymus	thymus
4	chr20:21693000-21695800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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