Variant report

Variant	rs1786171
Chromosome Location	chr11:65769809-65769810
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:65769254-65770441	K562	blood:	n/a	n/a
2	SIN3AK20	chr11:65769234-65770083	PFSK-1	brain:	n/a	n/a
3	ELF1	chr11:65769369-65770171	K562	blood:	n/a	chr11:65769736-65769749 chr11:65769946-65769955 chr11:65769945-65769954 chr11:65769944-65769955 chr11:65769951-65769960
4	FOXA2	chr11:65769449-65769934	A549	lung:	n/a	n/a
5	GATA3	chr11:65769284-65770006	MCF-7	breast:	n/a	n/a
6	MAX	chr11:65769260-65770583	ECC-1	luminal epithelium:	n/a	n/a
7	HA-E2F1	chr11:65769656-65770434	Hela-S3	cervix:	n/a	chr11:65770260-65770269 chr11:65770004-65770016
8	JUND	chr11:65769533-65769846	H1-hESC	embryonic stem cell:	n/a	n/a
9	ELF1	chr11:65769124-65770720	HCT-116	colon:	n/a	chr11:65769736-65769749 chr11:65769945-65769954 chr11:65770621-65770632 chr11:65769951-65769960 chr11:65769944-65769955 chr11:65769946-65769955
10	TAF1	chr11:65769326-65769887	H1-neurons	neurons:	n/a	n/a
11	BCL3	chr11:65769199-65770056	A549	lung:	n/a	chr11:65769955-65769964 chr11:65769952-65769961 chr11:65769625-65769634
12	POLR2A	chr11:65769364-65770449	K562	blood:	n/a	n/a
13	SPI1	chr11:65769526-65770108	GM12891	blood:	n/a	chr11:65769949-65769962 chr11:65769951-65769960
14	CHD2	chr11:65769459-65770148	K562	blood:	n/a	n/a
15	GABPA	chr11:65768954-65770600	A549	lung:	n/a	chr11:65770260-65770269 chr11:65769951-65769958 chr11:65769005-65769016
16	MYC	chr11:65769540-65770044	MCF10A-Er-Src	breast:	n/a	n/a
17	TAL1	chr11:65769470-65769907	K562	blood:	n/a	n/a
18	POLR2A	chr11:65768894-65770645	HUVEC	blood vessel:	n/a	n/a
19	POLR2A	chr11:65769285-65770582	ECC-1	luminal epithelium:	n/a	n/a
20	YY1	chr11:65769518-65769987	A549	lung:	n/a	n/a
21	POLR2A	chr11:65769308-65770172	SK-N-MC	brain:	n/a	n/a
22	GABPA	chr11:65769179-65770502	Hela-S3	cervix:	n/a	chr11:65770260-65770269 chr11:65769951-65769958
23	TAF1	chr11:65769273-65770131	Hela-S3	cervix:	n/a	n/a
24	TAF1	chr11:65769159-65770597	PFSK-1	brain:	n/a	n/a
25	ZC3H11A	chr11:65769367-65769882	K562	blood:	n/a	n/a
26	EP300	chr11:65769384-65770131	HepG2	liver:	n/a	chr11:65769626-65769633 chr11:65769580-65769593 chr11:65769950-65769964 chr11:65769511-65769520
27	TBP	chr11:65769359-65770122	K562	blood:	n/a	n/a
28	FOXM1	chr11:65769250-65770164	GM12878	blood:	n/a	n/a
29	RFX5	chr11:65769496-65769855	K562	blood:	n/a	n/a
30	POLR2A	chr11:65769372-65770476	K562	blood:	n/a	n/a
31	POLR2A	chr11:65769201-65770495	GM12878	blood:	n/a	n/a
32	ARID3A	chr11:65769532-65769875	HepG2	liver:	n/a	n/a
33	FAM48A	chr11:65769286-65769850	Hela-S3	cervix:	n/a	n/a
34	ATF3	chr11:65769348-65770190	A549	lung:	n/a	n/a
35	E2F4	chr11:65769624-65770135	GM12878	blood:	n/a	chr11:65770004-65770016
36	POLR2A	chr11:65768720-65770765	K562	blood:	n/a	n/a
37	CREB1	chr11:65769343-65770468	A549	lung:	n/a	n/a
38	POLR2A	chr11:65768961-65771436	PANC-1	pancreas:	n/a	n/a
39	RAD21	chr11:65769530-65769900	H1-hESC	embryonic stem cell:	n/a	n/a
40	MAX	chr11:65769522-65770362	A549	lung:	n/a	n/a
41	REST	chr11:65769250-65770358	HL-60	blood:	n/a	chr11:65770264-65770274
42	ETS1	chr11:65769383-65770124	GM12878	blood:	n/a	chr11:65769392-65769405 chr11:65769625-65769634 chr11:65769625-65769634 chr11:65769947-65769957 chr11:65769624-65769637 chr11:65769625-65769634 chr11:65769623-65769633 chr11:65769952-65769961 chr11:65769625-65769634 chr11:65769953-65769963 chr11:65769952-65769963 chr11:65769946-65769957 chr11:65769625-65769634 chr11:65770024-65770037 chr11:65769627-65769636
43	PBX3	chr11:65769425-65770113	A549	lung:	n/a	n/a
44	TEAD4	chr11:65769382-65770433	ECC-1	luminal epithelium:	n/a	chr11:65769908-65769917
45	YY1	chr11:65769557-65769875	GM12891	blood:	n/a	n/a
46	PBX3	chr11:65769342-65770583	A549	lung:	n/a	n/a
47	YY1	chr11:65769429-65769971	H1-hESC	embryonic stem cell:	n/a	n/a
48	GABPA	chr11:65768954-65770733	MCF-7	breast:	n/a	chr11:65770260-65770269 chr11:65769951-65769958 chr11:65769005-65769016
49	TAF1	chr11:65769375-65770104	GM12878	blood:	n/a	n/a
50	HDAC2	chr11:65769311-65770065	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:65745204..65747160-chr11:65768458..65770932,2	MCF-7	breast:
2	chr11:65727706..65730705-chr11:65767958..65771448,5	K562	blood:
3	chr11:65768250..65771590-chr11:65817294..65821421,6	K562	blood:
4	chr11:65768250..65771110-chr11:65819143..65821313,2	K562	blood:
5	chr11:65188857..65190458-chr11:65768140..65769977,2	K562	blood:
6	chr11:65768121..65772581-chr11:65835630..65838620,4	MCF-7	breast:
7	chr11:65728631..65731213-chr11:65769693..65771448,3	K562	blood:
8	chr11:65767772..65771693-chr11:65812597..65815090,3	MCF-7	breast:
9	chr11:65626233..65629168-chr11:65768411..65771473,3	MCF-7	breast:
10	chr11:65728953..65729494-chr11:65769689..65770299,3	NB4	blood:
11	chr11:65767679..65771369-chr11:65818165..65822112,6	MCF-7	breast:
12	chr11:65768713..65771187-chr11:65815106..65817250,2	MCF-7	breast:
13	chr11:65727817..65730505-chr11:65769706..65771571,3	MCF-7	breast:
14	chr11:65485229..65488136-chr11:65767888..65770369,2	MCF-7	breast:
15	chr11:65727757..65730728-chr11:65768462..65771270,6	MCF-7	breast:
16	chr11:65624197..65625879-chr11:65767979..65770257,2	MCF-7	breast:
17	chr11:65380602..65383246-chr11:65768678..65771455,2	K562	blood:
18	chr11:65769145..65771135-chr11:65826724..65830064,3	MCF-7	breast:
19	chr11:65769427..65770115-chr11:65819515..65820190,2	K562	blood:
20	chr1:27189330..27189884-chr11:65769741..65770474,2	Hela-S3	cervix:
21	chr11:65631727..65633927-chr11:65768782..65771616,2	MCF-7	breast:
22	chr11:65729055..65729675-chr11:65769440..65770326,3	MCF-7	breast:
23	chr11:65769586..65770200-chr17:56708890..56709438,2	Hela-S3	cervix:
24	chr1:41327504..41328271-chr11:65769241..65769940,2	NB4	blood:
25	chr11:65635925..65638559-chr11:65769134..65770863,2	MCF-7	breast:
26	chr11:65768123..65770687-chr11:65788351..65790253,5	MCF-7	breast:
27	chr11:65428607..65430796-chr11:65768393..65771088,2	K562	blood:
28	chr11:65623413..65628719-chr11:65768360..65773657,11	MCF-7	breast:
29	chr11:65386057..65388791-chr11:65767890..65770632,2	K562	blood:
30	chr11:65769204..65770072-chr15:52860591..52861542,2	Hela-S3	cervix:

Variant related genes	Relation type
BANF1	TF binding region
EIF1AD	TF binding region
ENSG00000175793	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000175229	Chromatin interaction
ENSG00000175294	Chromatin interaction
ENSG00000179862	Chromatin interaction
ENSG00000175467	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000172638	Chromatin interaction
ENSG00000173039	Chromatin interaction
ENSG00000197136	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000128989	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000212195	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11227378	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1151510	0.86[AMR][1000 genomes]
rs1151511	0.81[AMR][1000 genomes]
rs1151514	0.86[AMR][1000 genomes]
rs1191716	0.84[AMR][1000 genomes]
rs1786172	0.84[AMR][1000 genomes]
rs1786174	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs506873	0.84[AMR][1000 genomes]
rs507672	0.84[AMR][1000 genomes]
rs522553	0.84[AMR][1000 genomes]
rs534201	0.83[AMR][1000 genomes]
rs543952	0.81[AMR][1000 genomes]
rs548435	0.93[EUR][1000 genomes]
rs549334	0.83[AMR][1000 genomes]
rs559161	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs610497	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs615646	0.83[AMR][1000 genomes]
rs632640	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs668210	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs677350	0.86[AMR][1000 genomes]
rs684546	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs685334	0.84[EUR][1000 genomes]
rs7933510	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
6	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65768000-65770400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:65768000-65770400	Active TSS	Osteobl	bone
3	chr11:65768000-65770600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:65768000-65770600	Active TSS	Right Ventricle	heart
5	chr11:65768000-65770800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:65768000-65770800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:65768000-65770800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:65768000-65771200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:65768200-65770400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:65768200-65770400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:65768200-65770400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:65768200-65770400	Active TSS	Hela-S3	cervix
13	chr11:65768200-65770400	Active TSS	NH-A	brain
14	chr11:65768200-65770600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:65768200-65770600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:65768200-65770600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:65768200-65770600	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr11:65768200-65770600	Active TSS	Muscle Satellite Cultured Cells	--
19	chr11:65768200-65770600	Active TSS	Rectal Smooth Muscle	rectum
20	chr11:65768200-65770600	Active TSS	Dnd41	blood
21	chr11:65768200-65770600	Active TSS	GM12878-XiMat	blood
22	chr11:65768200-65770600	Active TSS	HMEC	breast
23	chr11:65768200-65770600	Active TSS	HSMM	muscle
24	chr11:65768200-65770600	Active TSS	K562	blood
25	chr11:65768200-65770800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:65768400-65770400	Active TSS	Fetal Intestine Large	intestine
27	chr11:65768400-65770600	Active TSS	NHLF	lung
28	chr11:65768400-65771000	Active TSS	H1 Cell Line	embryonic stem cell
29	chr11:65768400-65771000	Active TSS	H9 Cell Line	embryonic stem cell
30	chr11:65768400-65771200	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr11:65768400-65771200	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr11:65768600-65770200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:65768600-65770400	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr11:65768600-65770400	Active TSS	Brain Hippocampus Middle	brain
35	chr11:65768600-65770400	Active TSS	Brain Substantia Nigra	brain
36	chr11:65768600-65770400	Active TSS	Colonic Mucosa	Colon
37	chr11:65768600-65770400	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr11:65768600-65770400	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr11:65768600-65770400	Active TSS	Rectal Mucosa Donor 31	rectum
40	chr11:65768600-65770400	Active TSS	Thymus	Thymus
41	chr11:65768600-65770400	Active TSS	HUVEC	blood vessel
42	chr11:65768600-65770400	Active TSS	NHEK	skin
43	chr11:65768600-65770600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:65768600-65770600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:65768600-65770600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:65768600-65770600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:65768600-65770600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:65768600-65770600	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr11:65768600-65770600	Active TSS	Colon Smooth Muscle	Colon
50	chr11:65768600-65770600	Active TSS	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links