Variant report

Variant	rs17862049
Chromosome Location	chr4:118520728-118520729
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11729967	0.87[EUR][1000 genomes]
rs1352576	0.87[EUR][1000 genomes]
rs2220496	0.91[ASN][1000 genomes]
rs2635295	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879832	chr4:118502728-118536051	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1825113	chr4:118505427-118544235	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879833	chr4:118510812-118556306	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118518400-118522400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:118518600-118521200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:118520400-118520800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:118520400-118520800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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