Variant report

Variant	rs17862325
Chromosome Location	chr7:126854653-126854654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11563684	1.00[JPT][hapmap]
rs11772051	0.89[JPT][hapmap]
rs12706769	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs1361958	1.00[JPT][hapmap]
rs17862324	1.00[JPT][hapmap]
rs17866227	0.88[YRI][hapmap]
rs17866228	0.88[YRI][hapmap]
rs17867034	0.88[YRI][hapmap]
rs17867794	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17868696	0.87[YRI][hapmap]
rs2237799	1.00[JPT][hapmap]
rs2237801	0.81[JPT][hapmap]
rs2237802	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2237804	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2283100	1.00[JPT][hapmap]
rs2299553	1.00[JPT][hapmap]
rs2299556	1.00[JPT][hapmap]
rs6965293	0.88[YRI][hapmap]
rs7784674	0.87[YRI][hapmap]
rs886003	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs952912	1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv889190	chr7:126841090-126856057	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1819919	chr7:126850298-126888714	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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