Variant report

Variant	rs17862931
Chromosome Location	chr2:234876837-234876838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10164928	1.00[ASN][1000 genomes]
rs10204079	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11890203	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13384181	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13390675	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13399418	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:234874000-234879400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:234875000-234878000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:234875200-234877600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr2:234875200-234877600	Enhancers	Thymus	Thymus
8	chr2:234875600-234878800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:234875800-234877200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:234876000-234882200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:234876200-234877600	Enhancers	Fetal Thymus	thymus
12	chr2:234876400-234877400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr2:234876400-234882000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:234876400-234882200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:234876400-234883400	Weak transcription	HSMMtube	muscle
16	chr2:234876800-234877800	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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