Variant report

Variant	rs17863571
Chromosome Location	chr2:51664101-51664102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:51664014-51664109	GM10248	blood:	n/a	n/a
2	NFYB	chr2:51663772-51664295	GM12878	blood:	n/a	n/a
3	SP1	chr2:51663900-51664224	GM12878	blood:	n/a	n/a
4	SP1	chr2:51663856-51664219	GM12878	blood:	n/a	n/a
5	NFYB	chr2:51663910-51664308	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000222692	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs17588430	1.00[ASN][1000 genomes]
rs17588666	1.00[ASN][1000 genomes]
rs17588882	1.00[ASN][1000 genomes]
rs17588966	1.00[ASN][1000 genomes]
rs17591027	0.83[EUR][1000 genomes]
rs17863570	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852777	0.94[EUR][1000 genomes]
rs2353318	1.00[ASN][1000 genomes]
rs4998140	1.00[ASN][1000 genomes]
rs4998141	1.00[ASN][1000 genomes]
rs4998143	1.00[ASN][1000 genomes]
rs4998144	1.00[ASN][1000 genomes]
rs55653342	1.00[ASN][1000 genomes]
rs62140737	1.00[ASN][1000 genomes]
rs62140744	1.00[ASN][1000 genomes]
rs62140745	1.00[ASN][1000 genomes]
rs62140746	1.00[ASN][1000 genomes]
rs62140747	1.00[ASN][1000 genomes]
rs62140748	1.00[ASN][1000 genomes]
rs62142867	1.00[ASN][1000 genomes]
rs62142868	1.00[ASN][1000 genomes]
rs62142869	1.00[ASN][1000 genomes]
rs62142871	1.00[ASN][1000 genomes]
rs62142872	1.00[ASN][1000 genomes]
rs62142873	1.00[ASN][1000 genomes]
rs62142874	1.00[ASN][1000 genomes]
rs62142875	1.00[ASN][1000 genomes]
rs62142876	1.00[ASN][1000 genomes]
rs62142877	1.00[ASN][1000 genomes]
rs62142879	1.00[ASN][1000 genomes]
rs62142880	1.00[ASN][1000 genomes]
rs62142884	1.00[ASN][1000 genomes]
rs62142885	1.00[ASN][1000 genomes]
rs62142886	1.00[ASN][1000 genomes]
rs62142887	1.00[ASN][1000 genomes]
rs6709031	1.00[ASN][1000 genomes]
rs72832163	1.00[ASN][1000 genomes]
rs72832165	1.00[ASN][1000 genomes]
rs72832170	1.00[ASN][1000 genomes]
rs72832172	1.00[ASN][1000 genomes]
rs72832179	1.00[ASN][1000 genomes]
rs7563048	1.00[ASN][1000 genomes]
rs7568061	0.96[EUR][1000 genomes]
rs7576159	1.00[ASN][1000 genomes]
rs7576370	1.00[ASN][1000 genomes]
rs7579154	1.00[ASN][1000 genomes]
rs7579241	1.00[ASN][1000 genomes]
rs7602731	1.00[ASN][1000 genomes]
rs7602908	1.00[ASN][1000 genomes]
rs7602955	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007188	chr2:51135645-51821787	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535704	chr2:51135645-51821787	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1005168	chr2:51142848-51702008	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv535705	chr2:51142848-51702008	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv948449	chr2:51152019-51735494	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1001552	chr2:51225970-52139741	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv535708	chr2:51225970-52139741	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1011583	chr2:51382812-51702008	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv535711	chr2:51382812-51702008	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv821624	chr2:51513925-51844864	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv874066	chr2:51554047-51680489	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv581879	chr2:51639748-51673576	Weak transcription Active TSS ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv581880	chr2:51643185-51667739	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv470463	chr2:51643185-51668142	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv437446	chr2:51651243-51665387	ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3446801	chr2:51659396-51678205	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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