Variant report

Variant	rs17864768
Chromosome Location	chr2:234897718-234897719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11563206	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13384181	1.00[YRI][hapmap]
rs17862943	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17864770	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17868401	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2885478	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234886200-234898000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:234886200-234898200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:234886400-234901200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:234892400-234901000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:234893000-234901200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:234893400-234904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:234896600-234903400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:234896800-234898200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:234896800-234903200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr2:234896800-234903600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr2:234896800-234905000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:234897000-234899000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr2:234897000-234899400	Enhancers	Liver	Liver
14	chr2:234897200-234899400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr2:234897400-234898200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr2:234897400-234898800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr2:234897400-234899000	Enhancers	Primary T cells from cord blood	blood
18	chr2:234897400-234900200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr2:234897600-234898800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links